Hb_002498_170

Information

Type -
Description -
Location Contig2498: 99233-102381
Sequence    

Annotation

kegg
ID tcc:TCM_030256
description Glycine cleavage T-protein family isoform 1
nr
ID XP_012091320.1
description PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
swissprot
ID P54260
description Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1
trembl
ID A0A067JAF8
description Aminomethyltransferase OS=Jatropha curcas GN=JCGZ_21198 PE=3 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25991: 99314-102393 , PASA_asmbl_25992: 99469-101727 , PASA_asmbl_25994: 101464-101629
cDNA
(Sanger)
(ID:Location)		 026_H06.ab1: 99314-100699 , 029_N16.ab1: 99469-101680 , 036_P20.ab1: 99469-101253 , 040_K10.ab1: 99469-101327 , 051_B20.ab1: 99469-101322 , 053_K23.ab1: 99469-101655

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_170 0.0 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
2 Hb_000340_410 0.0997334785 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
3 Hb_006846_160 0.1051809033 - - electron transporter, putative [Ricinus communis]
4 Hb_006252_030 0.1092210805 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
5 Hb_004052_070 0.1161512971 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
6 Hb_006618_070 0.1178062458 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
7 Hb_000322_040 0.1222720743 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
8 Hb_000749_200 0.1276442289 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
9 Hb_001959_240 0.1322021913 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_003683_030 0.1327852263 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
11 Hb_002400_010 0.1331221417 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
12 Hb_006911_070 0.1335112333 - - 50S ribosomal protein L1p, putative [Ricinus communis]
13 Hb_001352_080 0.1335935589 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
14 Hb_000035_210 0.1346558839 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
15 Hb_000934_260 0.1427342857 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_000056_310 0.1460195654 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
17 Hb_005038_030 0.1474963396 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
18 Hb_001975_050 0.1506443574 - - Tyrosine-specific transport protein, putative [Ricinus communis]
19 Hb_001301_330 0.1530280029 - - OTU-like cysteine protease family protein [Populus trichocarpa]
20 Hb_001689_050 0.154334226 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]

Gene co-expression network

sample Hb_002498_170 Hb_002498_170 Hb_000340_410 Hb_000340_410 Hb_002498_170--Hb_000340_410 Hb_006846_160 Hb_006846_160 Hb_002498_170--Hb_006846_160 Hb_006252_030 Hb_006252_030 Hb_002498_170--Hb_006252_030 Hb_004052_070 Hb_004052_070 Hb_002498_170--Hb_004052_070 Hb_006618_070 Hb_006618_070 Hb_002498_170--Hb_006618_070 Hb_000322_040 Hb_000322_040 Hb_002498_170--Hb_000322_040 Hb_188063_030 Hb_188063_030 Hb_000340_410--Hb_188063_030 Hb_014320_010 Hb_014320_010 Hb_000340_410--Hb_014320_010 Hb_000340_410--Hb_006252_030 Hb_000340_410--Hb_006846_160 Hb_000340_410--Hb_000322_040 Hb_000934_260 Hb_000934_260 Hb_006846_160--Hb_000934_260 Hb_006846_160--Hb_000322_040 Hb_006846_160--Hb_006252_030 Hb_000538_130 Hb_000538_130 Hb_006846_160--Hb_000538_130 Hb_003862_040 Hb_003862_040 Hb_006846_160--Hb_003862_040 Hb_006252_030--Hb_000322_040 Hb_000056_310 Hb_000056_310 Hb_006252_030--Hb_000056_310 Hb_000169_070 Hb_000169_070 Hb_006252_030--Hb_000169_070 Hb_005618_080 Hb_005618_080 Hb_006252_030--Hb_005618_080 Hb_000749_200 Hb_000749_200 Hb_006252_030--Hb_000749_200 Hb_030131_020 Hb_030131_020 Hb_004052_070--Hb_030131_020 Hb_000035_210 Hb_000035_210 Hb_004052_070--Hb_000035_210 Hb_004907_090 Hb_004907_090 Hb_004052_070--Hb_004907_090 Hb_004013_030 Hb_004013_030 Hb_004052_070--Hb_004013_030 Hb_003160_070 Hb_003160_070 Hb_004052_070--Hb_003160_070 Hb_000140_440 Hb_000140_440 Hb_006618_070--Hb_000140_440 Hb_002249_040 Hb_002249_040 Hb_006618_070--Hb_002249_040 Hb_000211_040 Hb_000211_040 Hb_006618_070--Hb_000211_040 Hb_001959_240 Hb_001959_240 Hb_006618_070--Hb_001959_240 Hb_006555_040 Hb_006555_040 Hb_006618_070--Hb_006555_040 Hb_000322_040--Hb_000934_260 Hb_000322_040--Hb_000056_310 Hb_004208_090 Hb_004208_090 Hb_000322_040--Hb_004208_090 Hb_000146_030 Hb_000146_030 Hb_000322_040--Hb_000146_030 Hb_000802_050 Hb_000802_050 Hb_000322_040--Hb_000802_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
142.175 79.5444 681.344 206.827 168.114 116.161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.744 28.117 39.1016 34.4604 448.07

CAGE analysis