Hb_004052_070

Information

Type -
Description -
Location Contig4052: 72581-77712
Sequence    

Annotation

kegg
ID rcu:RCOM_1469450
description hypothetical protein
nr
ID XP_012080399.1
description PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
swissprot
ID Q9S823
description Protein LONGIFOLIA 2 OS=Arabidopsis thaliana GN=LNG2 PE=1 SV=1
trembl
ID A0A067K5G5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11738 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40188: 72398-78540 , PASA_asmbl_40189: 72398-74424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_070 0.0 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
2 Hb_030131_020 0.1078827386 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
3 Hb_002498_170 0.1161512971 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
4 Hb_000035_210 0.1309427556 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
5 Hb_004907_090 0.1352279535 - - ATP binding protein, putative [Ricinus communis]
6 Hb_004013_030 0.137292008 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
7 Hb_003160_070 0.1397035894 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
8 Hb_000808_210 0.1399231659 - - hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum]
9 Hb_002999_030 0.1406273198 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
10 Hb_001624_040 0.1440521207 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
11 Hb_007594_080 0.1450542565 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
12 Hb_006618_070 0.1461813171 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
13 Hb_001450_020 0.1490002524 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
14 Hb_000211_040 0.1496966464 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
15 Hb_006816_190 0.1510855198 - - calreticulin family protein [Populus trichocarpa]
16 Hb_004116_160 0.1515203875 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
17 Hb_000694_030 0.1536947307 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
18 Hb_001160_110 0.1539819596 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
19 Hb_000086_180 0.1541393704 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
20 Hb_001959_240 0.1546333587 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004052_070 Hb_004052_070 Hb_030131_020 Hb_030131_020 Hb_004052_070--Hb_030131_020 Hb_002498_170 Hb_002498_170 Hb_004052_070--Hb_002498_170 Hb_000035_210 Hb_000035_210 Hb_004052_070--Hb_000035_210 Hb_004907_090 Hb_004907_090 Hb_004052_070--Hb_004907_090 Hb_004013_030 Hb_004013_030 Hb_004052_070--Hb_004013_030 Hb_003160_070 Hb_003160_070 Hb_004052_070--Hb_003160_070 Hb_000808_210 Hb_000808_210 Hb_030131_020--Hb_000808_210 Hb_000009_020 Hb_000009_020 Hb_030131_020--Hb_000009_020 Hb_001624_040 Hb_001624_040 Hb_030131_020--Hb_001624_040 Hb_029695_070 Hb_029695_070 Hb_030131_020--Hb_029695_070 Hb_001450_020 Hb_001450_020 Hb_030131_020--Hb_001450_020 Hb_000340_410 Hb_000340_410 Hb_002498_170--Hb_000340_410 Hb_006846_160 Hb_006846_160 Hb_002498_170--Hb_006846_160 Hb_006252_030 Hb_006252_030 Hb_002498_170--Hb_006252_030 Hb_006618_070 Hb_006618_070 Hb_002498_170--Hb_006618_070 Hb_000322_040 Hb_000322_040 Hb_002498_170--Hb_000322_040 Hb_000094_100 Hb_000094_100 Hb_000035_210--Hb_000094_100 Hb_000035_210--Hb_000009_020 Hb_000056_310 Hb_000056_310 Hb_000035_210--Hb_000056_310 Hb_001953_100 Hb_001953_100 Hb_000035_210--Hb_001953_100 Hb_002044_020 Hb_002044_020 Hb_000035_210--Hb_002044_020 Hb_004837_210 Hb_004837_210 Hb_000035_210--Hb_004837_210 Hb_004052_180 Hb_004052_180 Hb_004907_090--Hb_004052_180 Hb_007594_080 Hb_007594_080 Hb_004907_090--Hb_007594_080 Hb_004907_090--Hb_004013_030 Hb_006816_190 Hb_006816_190 Hb_004907_090--Hb_006816_190 Hb_000001_090 Hb_000001_090 Hb_004907_090--Hb_000001_090 Hb_002686_300 Hb_002686_300 Hb_004907_090--Hb_002686_300 Hb_006588_160 Hb_006588_160 Hb_004013_030--Hb_006588_160 Hb_000154_050 Hb_000154_050 Hb_004013_030--Hb_000154_050 Hb_004013_030--Hb_006816_190 Hb_004013_030--Hb_001450_020 Hb_000331_140 Hb_000331_140 Hb_004013_030--Hb_000331_140 Hb_074399_010 Hb_074399_010 Hb_004013_030--Hb_074399_010 Hb_001160_110 Hb_001160_110 Hb_003160_070--Hb_001160_110 Hb_005665_090 Hb_005665_090 Hb_003160_070--Hb_005665_090 Hb_003160_070--Hb_029695_070 Hb_003640_050 Hb_003640_050 Hb_003160_070--Hb_003640_050 Hb_012779_080 Hb_012779_080 Hb_003160_070--Hb_012779_080 Hb_000792_050 Hb_000792_050 Hb_003160_070--Hb_000792_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.12136 2.40714 19.2307 6.66161 4.96427 3.55067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.830677 0.570685 1.51066 2.41866 7.71627

CAGE analysis