Hb_002249_040

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2249: 30502-35156
Sequence    

Annotation

kegg
ID rcu:RCOM_1504040
description Transcription factor ICE1, putative
nr
ID XP_012090600.1
description PREDICTED: transcription factor ICE1-like [Jatropha curcas]
swissprot
ID Q9LSE2
description Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
trembl
ID B9RA76
description Transcription factor ICE1, putative OS=Ricinus communis GN=RCOM_1504040 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor ice1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23391: 30539-35154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_040 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]
2 Hb_008725_140 0.0991470451 - - PREDICTED: kynurenine--oxoglutarate transaminase-like isoform X1 [Jatropha curcas]
3 Hb_006618_070 0.1201392414 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
4 Hb_001624_040 0.1259260639 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
5 Hb_004116_160 0.1354131231 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
6 Hb_002301_210 0.138366242 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
7 Hb_000749_200 0.1423243135 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
8 Hb_000803_090 0.1426841007 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
9 Hb_001250_040 0.1440833139 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
10 Hb_000418_090 0.1443586513 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_003683_030 0.1447459369 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
12 Hb_001959_240 0.1454271172 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_054865_020 0.1465803067 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
14 Hb_000313_290 0.1511402463 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_002265_010 0.1542268399 - - ef-hand calcium binding protein, putative [Ricinus communis]
16 Hb_002498_170 0.1553081712 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
17 Hb_065525_130 0.1563376962 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_004052_070 0.1564200304 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
19 Hb_000538_260 0.1573225476 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
20 Hb_011609_010 0.1578472422 - - PREDICTED: zinc transporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002249_040 Hb_002249_040 Hb_008725_140 Hb_008725_140 Hb_002249_040--Hb_008725_140 Hb_006618_070 Hb_006618_070 Hb_002249_040--Hb_006618_070 Hb_001624_040 Hb_001624_040 Hb_002249_040--Hb_001624_040 Hb_004116_160 Hb_004116_160 Hb_002249_040--Hb_004116_160 Hb_002301_210 Hb_002301_210 Hb_002249_040--Hb_002301_210 Hb_000749_200 Hb_000749_200 Hb_002249_040--Hb_000749_200 Hb_002265_010 Hb_002265_010 Hb_008725_140--Hb_002265_010 Hb_000424_070 Hb_000424_070 Hb_008725_140--Hb_000424_070 Hb_000538_260 Hb_000538_260 Hb_008725_140--Hb_000538_260 Hb_011609_010 Hb_011609_010 Hb_008725_140--Hb_011609_010 Hb_008725_140--Hb_006618_070 Hb_002498_170 Hb_002498_170 Hb_006618_070--Hb_002498_170 Hb_000140_440 Hb_000140_440 Hb_006618_070--Hb_000140_440 Hb_000211_040 Hb_000211_040 Hb_006618_070--Hb_000211_040 Hb_001959_240 Hb_001959_240 Hb_006618_070--Hb_001959_240 Hb_006555_040 Hb_006555_040 Hb_006618_070--Hb_006555_040 Hb_001624_040--Hb_011609_010 Hb_001624_040--Hb_002301_210 Hb_000453_230 Hb_000453_230 Hb_001624_040--Hb_000453_230 Hb_001624_040--Hb_004116_160 Hb_000418_090 Hb_000418_090 Hb_001624_040--Hb_000418_090 Hb_000803_090 Hb_000803_090 Hb_001624_040--Hb_000803_090 Hb_054865_020 Hb_054865_020 Hb_004116_160--Hb_054865_020 Hb_001396_020 Hb_001396_020 Hb_004116_160--Hb_001396_020 Hb_000098_240 Hb_000098_240 Hb_004116_160--Hb_000098_240 Hb_001279_020 Hb_001279_020 Hb_004116_160--Hb_001279_020 Hb_000529_130 Hb_000529_130 Hb_004116_160--Hb_000529_130 Hb_001250_040 Hb_001250_040 Hb_002301_210--Hb_001250_040 Hb_002301_210--Hb_000803_090 Hb_001689_050 Hb_001689_050 Hb_002301_210--Hb_001689_050 Hb_000076_090 Hb_000076_090 Hb_002301_210--Hb_000076_090 Hb_003894_060 Hb_003894_060 Hb_002301_210--Hb_003894_060 Hb_003683_030 Hb_003683_030 Hb_000749_200--Hb_003683_030 Hb_000056_310 Hb_000056_310 Hb_000749_200--Hb_000056_310 Hb_006252_030 Hb_006252_030 Hb_000749_200--Hb_006252_030 Hb_000465_440 Hb_000465_440 Hb_000749_200--Hb_000465_440 Hb_002400_010 Hb_002400_010 Hb_000749_200--Hb_002400_010 Hb_000934_260 Hb_000934_260 Hb_000749_200--Hb_000934_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.63334 12.3208 40.5094 10.8911 9.09618 13.5759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44388 1.28914 0.870805 3.51973 20.1936

CAGE analysis