Hb_002265_010

Information

Type -
Description -
Location Contig2265: 24343-26662
Sequence    

Annotation

kegg
ID rcu:RCOM_0057830
description ef-hand calcium binding protein, putative
nr
ID XP_002534120.1
description ef-hand calcium binding protein, putative [Ricinus communis]
swissprot
ID Q8W4L0
description Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1
trembl
ID B9T7A1
description Ef-hand calcium binding protein, putative OS=Ricinus communis GN=RCOM_0057830 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml49

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23527: 24333-26660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002265_010 0.0 - - ef-hand calcium binding protein, putative [Ricinus communis]
2 Hb_155025_010 0.0990412487 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_006502_020 0.1027182901 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
4 Hb_005873_020 0.1234690812 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
5 Hb_005731_110 0.1249945228 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
6 Hb_000663_020 0.1279739023 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
7 Hb_065525_130 0.1292186706 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
8 Hb_178968_140 0.1296075141 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_008387_010 0.1314260201 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
10 Hb_004725_030 0.1323732452 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
11 Hb_003925_060 0.132480552 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
12 Hb_001105_050 0.1343971526 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
13 Hb_008725_140 0.1349345543 - - PREDICTED: kynurenine--oxoglutarate transaminase-like isoform X1 [Jatropha curcas]
14 Hb_006569_040 0.1358966651 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
15 Hb_010367_030 0.1363015635 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001396_070 0.1366922399 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000072_250 0.139169785 transcription factor TF Family: Orphans -
18 Hb_000011_240 0.1394680204 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
19 Hb_000836_350 0.1400132242 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
20 Hb_000140_440 0.1406449442 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]

Gene co-expression network

sample Hb_002265_010 Hb_002265_010 Hb_155025_010 Hb_155025_010 Hb_002265_010--Hb_155025_010 Hb_006502_020 Hb_006502_020 Hb_002265_010--Hb_006502_020 Hb_005873_020 Hb_005873_020 Hb_002265_010--Hb_005873_020 Hb_005731_110 Hb_005731_110 Hb_002265_010--Hb_005731_110 Hb_000663_020 Hb_000663_020 Hb_002265_010--Hb_000663_020 Hb_065525_130 Hb_065525_130 Hb_002265_010--Hb_065525_130 Hb_000140_440 Hb_000140_440 Hb_155025_010--Hb_000140_440 Hb_006120_040 Hb_006120_040 Hb_155025_010--Hb_006120_040 Hb_006555_040 Hb_006555_040 Hb_155025_010--Hb_006555_040 Hb_000836_350 Hb_000836_350 Hb_155025_010--Hb_000836_350 Hb_001322_020 Hb_001322_020 Hb_155025_010--Hb_001322_020 Hb_001245_050 Hb_001245_050 Hb_006502_020--Hb_001245_050 Hb_001558_060 Hb_001558_060 Hb_006502_020--Hb_001558_060 Hb_000375_290 Hb_000375_290 Hb_006502_020--Hb_000375_290 Hb_004725_030 Hb_004725_030 Hb_006502_020--Hb_004725_030 Hb_003992_180 Hb_003992_180 Hb_006502_020--Hb_003992_180 Hb_054865_020 Hb_054865_020 Hb_005873_020--Hb_054865_020 Hb_004718_060 Hb_004718_060 Hb_005873_020--Hb_004718_060 Hb_009178_010 Hb_009178_010 Hb_005873_020--Hb_009178_010 Hb_008387_010 Hb_008387_010 Hb_005873_020--Hb_008387_010 Hb_003925_060 Hb_003925_060 Hb_005873_020--Hb_003925_060 Hb_000878_160 Hb_000878_160 Hb_005873_020--Hb_000878_160 Hb_000640_160 Hb_000640_160 Hb_005731_110--Hb_000640_160 Hb_005731_110--Hb_000663_020 Hb_000959_220 Hb_000959_220 Hb_005731_110--Hb_000959_220 Hb_005162_110 Hb_005162_110 Hb_005731_110--Hb_005162_110 Hb_003225_020 Hb_003225_020 Hb_005731_110--Hb_003225_020 Hb_065755_030 Hb_065755_030 Hb_005731_110--Hb_065755_030 Hb_002218_020 Hb_002218_020 Hb_000663_020--Hb_002218_020 Hb_001195_270 Hb_001195_270 Hb_000663_020--Hb_001195_270 Hb_077026_010 Hb_077026_010 Hb_000663_020--Hb_077026_010 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_000085_140 Hb_000085_140 Hb_065525_130--Hb_000085_140 Hb_012098_150 Hb_012098_150 Hb_065525_130--Hb_012098_150 Hb_002870_020 Hb_002870_020 Hb_065525_130--Hb_002870_020 Hb_001105_050 Hb_001105_050 Hb_065525_130--Hb_001105_050 Hb_001619_050 Hb_001619_050 Hb_065525_130--Hb_001619_050 Hb_008206_060 Hb_008206_060 Hb_065525_130--Hb_008206_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7535 45.204 76.4832 23.4851 20.0905 33.3791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6556 14.622 6.6103 7.10116 37.621

CAGE analysis