Hb_000140_440

Information

Type -
Description -
Location Contig140: 430951-437939
Sequence    

Annotation

kegg
ID pop:POPTR_0007s01700g
description POPTRDRAFT_718302; GLYOXALASE 2-1 family protein
nr
ID XP_012065212.1
description PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
swissprot
ID Q8LDW8
description Probable hydroxyacylglutathione hydrolase 2, chloroplast OS=Arabidopsis thaliana GN=GLX2-4 PE=2 SV=1
trembl
ID A0A067L9H7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20898 PE=3 SV=1
Gene Ontology
ID GO:0004416
description probable hydroxyacylglutathione hydrolase chloroplast isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10875: 430925-431026 , PASA_asmbl_10878: 431039-437858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_440 0.0 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
2 Hb_006555_040 0.0549236776 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
3 Hb_004994_080 0.092215147 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_155025_010 0.0927427857 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_007451_040 0.0977834315 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
6 Hb_002218_020 0.1005530382 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
7 Hb_000181_060 0.1028476036 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
8 Hb_007263_010 0.1038558046 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_000012_270 0.1046300183 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
10 Hb_001930_030 0.1059110898 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
11 Hb_005731_110 0.1067626057 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
12 Hb_000663_020 0.1077771786 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
13 Hb_021650_010 0.1079413046 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
14 Hb_006120_040 0.1088028868 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
15 Hb_001430_020 0.1114907273 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
16 Hb_005217_030 0.1123422266 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
17 Hb_001623_490 0.1123441838 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
18 Hb_153553_040 0.1127015512 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
19 Hb_000284_130 0.1139141324 - - sodium-bile acid cotransporter, putative [Ricinus communis]
20 Hb_012779_080 0.1161772455 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000140_440 Hb_000140_440 Hb_006555_040 Hb_006555_040 Hb_000140_440--Hb_006555_040 Hb_004994_080 Hb_004994_080 Hb_000140_440--Hb_004994_080 Hb_155025_010 Hb_155025_010 Hb_000140_440--Hb_155025_010 Hb_007451_040 Hb_007451_040 Hb_000140_440--Hb_007451_040 Hb_002218_020 Hb_002218_020 Hb_000140_440--Hb_002218_020 Hb_000181_060 Hb_000181_060 Hb_000140_440--Hb_000181_060 Hb_001930_030 Hb_001930_030 Hb_006555_040--Hb_001930_030 Hb_006555_040--Hb_004994_080 Hb_007263_010 Hb_007263_010 Hb_006555_040--Hb_007263_010 Hb_002255_040 Hb_002255_040 Hb_006555_040--Hb_002255_040 Hb_011386_050 Hb_011386_050 Hb_006555_040--Hb_011386_050 Hb_004994_080--Hb_007263_010 Hb_000364_100 Hb_000364_100 Hb_004994_080--Hb_000364_100 Hb_004994_080--Hb_000181_060 Hb_004994_080--Hb_011386_050 Hb_005162_110 Hb_005162_110 Hb_004994_080--Hb_005162_110 Hb_002265_010 Hb_002265_010 Hb_155025_010--Hb_002265_010 Hb_006120_040 Hb_006120_040 Hb_155025_010--Hb_006120_040 Hb_155025_010--Hb_006555_040 Hb_000836_350 Hb_000836_350 Hb_155025_010--Hb_000836_350 Hb_001322_020 Hb_001322_020 Hb_155025_010--Hb_001322_020 Hb_007451_040--Hb_007263_010 Hb_001541_110 Hb_001541_110 Hb_007451_040--Hb_001541_110 Hb_007451_040--Hb_004994_080 Hb_007451_040--Hb_006555_040 Hb_007451_040--Hb_005162_110 Hb_102948_010 Hb_102948_010 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_012438_030 Hb_012438_030 Hb_002218_020--Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010 Hb_000284_130 Hb_000284_130 Hb_000181_060--Hb_000284_130 Hb_000194_010 Hb_000194_010 Hb_000181_060--Hb_000194_010 Hb_000181_060--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000181_060--Hb_002027_320 Hb_001623_490 Hb_001623_490 Hb_000181_060--Hb_001623_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.0144 17.8625 75.14 22.4212 15.0396 15.9425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8481 11.3445 10.6384 7.60933 34.9065

CAGE analysis