Hb_001930_030

Information

Type -
Description -
Location Contig1930: 33250-37287
Sequence    

Annotation

kegg
ID rcu:RCOM_0521090
description 30S ribosomal protein S10, putative
nr
ID XP_012070989.1
description PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
swissprot
ID Q9LK61
description 30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=1
trembl
ID A0A067L5B3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01016 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19280: 33214-37291
cDNA
(Sanger)
(ID:Location)		 001_B08.ab1: 33205-37054 , 006_M14.ab1: 33205-37053 , 012_F20.ab1: 33214-37107 , 039_E20.ab1: 33225-35455 , 053_M01.ab1: 33227-37102

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001930_030 0.0 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
2 Hb_006555_040 0.0772657968 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
3 Hb_005731_110 0.0950754571 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
4 Hb_000445_070 0.0964889979 - - PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
5 Hb_015292_040 0.0984807126 - - PREDICTED: myb-like protein X [Jatropha curcas]
6 Hb_004994_080 0.0989828675 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000436_100 0.1006327587 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
8 Hb_000085_190 0.1024164651 - - FtsZ1 protein [Manihot esculenta]
9 Hb_000532_100 0.1052031015 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
10 Hb_000140_440 0.1059110898 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
11 Hb_002255_040 0.1072393175 - - PREDICTED: biotin synthase [Jatropha curcas]
12 Hb_007451_040 0.1090101341 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
13 Hb_006569_040 0.1095164241 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
14 Hb_005162_110 0.1105766705 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
15 Hb_000959_220 0.110846221 - - zinc finger protein, putative [Ricinus communis]
16 Hb_005389_170 0.1131999258 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
17 Hb_000364_100 0.1134494019 - - PREDICTED: uncharacterized protein LOC105639739 [Jatropha curcas]
18 Hb_007263_010 0.1138667506 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
19 Hb_000011_240 0.1149926214 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
20 Hb_000424_020 0.1158985555 - - Uncharacterized protein TCM_037386 [Theobroma cacao]

Gene co-expression network

sample Hb_001930_030 Hb_001930_030 Hb_006555_040 Hb_006555_040 Hb_001930_030--Hb_006555_040 Hb_005731_110 Hb_005731_110 Hb_001930_030--Hb_005731_110 Hb_000445_070 Hb_000445_070 Hb_001930_030--Hb_000445_070 Hb_015292_040 Hb_015292_040 Hb_001930_030--Hb_015292_040 Hb_004994_080 Hb_004994_080 Hb_001930_030--Hb_004994_080 Hb_000436_100 Hb_000436_100 Hb_001930_030--Hb_000436_100 Hb_000140_440 Hb_000140_440 Hb_006555_040--Hb_000140_440 Hb_006555_040--Hb_004994_080 Hb_007263_010 Hb_007263_010 Hb_006555_040--Hb_007263_010 Hb_002255_040 Hb_002255_040 Hb_006555_040--Hb_002255_040 Hb_011386_050 Hb_011386_050 Hb_006555_040--Hb_011386_050 Hb_000640_160 Hb_000640_160 Hb_005731_110--Hb_000640_160 Hb_000663_020 Hb_000663_020 Hb_005731_110--Hb_000663_020 Hb_000959_220 Hb_000959_220 Hb_005731_110--Hb_000959_220 Hb_005162_110 Hb_005162_110 Hb_005731_110--Hb_005162_110 Hb_003225_020 Hb_003225_020 Hb_005731_110--Hb_003225_020 Hb_065755_030 Hb_065755_030 Hb_005731_110--Hb_065755_030 Hb_000085_190 Hb_000085_190 Hb_000445_070--Hb_000085_190 Hb_001232_150 Hb_001232_150 Hb_000445_070--Hb_001232_150 Hb_000300_180 Hb_000300_180 Hb_000445_070--Hb_000300_180 Hb_000445_070--Hb_003225_020 Hb_021650_010 Hb_021650_010 Hb_000445_070--Hb_021650_010 Hb_015292_040--Hb_004994_080 Hb_000211_040 Hb_000211_040 Hb_015292_040--Hb_000211_040 Hb_015292_040--Hb_000663_020 Hb_001839_020 Hb_001839_020 Hb_015292_040--Hb_001839_020 Hb_000364_100 Hb_000364_100 Hb_015292_040--Hb_000364_100 Hb_004994_080--Hb_007263_010 Hb_004994_080--Hb_000364_100 Hb_000181_060 Hb_000181_060 Hb_004994_080--Hb_000181_060 Hb_004994_080--Hb_011386_050 Hb_004994_080--Hb_005162_110 Hb_000424_020 Hb_000424_020 Hb_000436_100--Hb_000424_020 Hb_000077_010 Hb_000077_010 Hb_000436_100--Hb_000077_010 Hb_029142_030 Hb_029142_030 Hb_000436_100--Hb_029142_030 Hb_000003_300 Hb_000003_300 Hb_000436_100--Hb_000003_300 Hb_000436_100--Hb_002255_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.7517 47.6222 162.4 24.5926 49.4648 32.243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3713 37.4661 19.0803 23.1117 73.9325

CAGE analysis