Hb_000003_300

Information

Type -
Description -
Location Contig3: 176481-177999
Sequence    

Annotation

kegg
ID pmum:103330698
description uncharacterized LOC103330698
nr
ID XP_012068596.1
description PREDICTED: uncharacterized protein LOC105631182 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8P9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24488 PE=4 SV=1
Gene Ontology
ID GO:0042651
description high chlorophyll fluorescence

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31399: 176475-177959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_300 0.0 - - PREDICTED: uncharacterized protein LOC105631182 [Jatropha curcas]
2 Hb_000436_100 0.1051848497 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
3 Hb_004128_200 0.1088626925 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
4 Hb_005389_100 0.1150504006 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
5 Hb_000424_020 0.1170186982 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
6 Hb_002228_110 0.1288617961 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
7 Hb_000836_430 0.1317148089 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
8 Hb_092337_020 0.1341770982 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
9 Hb_000563_330 0.1342100316 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_000098_140 0.1343942994 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
11 Hb_044155_010 0.1360573435 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
12 Hb_000077_010 0.1370793542 - - unnamed protein product [Vitis vinifera]
13 Hb_011249_030 0.1376389591 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
14 Hb_039605_010 0.138098561 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
15 Hb_009270_040 0.139726118 - - -
16 Hb_027073_030 0.1421068915 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
17 Hb_000959_220 0.1429062922 - - zinc finger protein, putative [Ricinus communis]
18 Hb_007101_160 0.1448189208 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004648_090 0.144891272 - - peroxisomal biogenesis factor, putative [Ricinus communis]
20 Hb_002232_190 0.1454385484 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000003_300 Hb_000003_300 Hb_000436_100 Hb_000436_100 Hb_000003_300--Hb_000436_100 Hb_004128_200 Hb_004128_200 Hb_000003_300--Hb_004128_200 Hb_005389_100 Hb_005389_100 Hb_000003_300--Hb_005389_100 Hb_000424_020 Hb_000424_020 Hb_000003_300--Hb_000424_020 Hb_002228_110 Hb_002228_110 Hb_000003_300--Hb_002228_110 Hb_000836_430 Hb_000836_430 Hb_000003_300--Hb_000836_430 Hb_000436_100--Hb_000424_020 Hb_000077_010 Hb_000077_010 Hb_000436_100--Hb_000077_010 Hb_029142_030 Hb_029142_030 Hb_000436_100--Hb_029142_030 Hb_001930_030 Hb_001930_030 Hb_000436_100--Hb_001930_030 Hb_002255_040 Hb_002255_040 Hb_000436_100--Hb_002255_040 Hb_003579_050 Hb_003579_050 Hb_004128_200--Hb_003579_050 Hb_011249_030 Hb_011249_030 Hb_004128_200--Hb_011249_030 Hb_027073_030 Hb_027073_030 Hb_004128_200--Hb_027073_030 Hb_001005_020 Hb_001005_020 Hb_004128_200--Hb_001005_020 Hb_001277_280 Hb_001277_280 Hb_004128_200--Hb_001277_280 Hb_039605_010 Hb_039605_010 Hb_004128_200--Hb_039605_010 Hb_000329_590 Hb_000329_590 Hb_005389_100--Hb_000329_590 Hb_004648_090 Hb_004648_090 Hb_005389_100--Hb_004648_090 Hb_000098_140 Hb_000098_140 Hb_005389_100--Hb_000098_140 Hb_002067_030 Hb_002067_030 Hb_005389_100--Hb_002067_030 Hb_001671_040 Hb_001671_040 Hb_005389_100--Hb_001671_040 Hb_000525_100 Hb_000525_100 Hb_005389_100--Hb_000525_100 Hb_000424_020--Hb_029142_030 Hb_000424_020--Hb_002255_040 Hb_000424_020--Hb_011249_030 Hb_000424_020--Hb_001930_030 Hb_002228_110--Hb_004648_090 Hb_001898_240 Hb_001898_240 Hb_002228_110--Hb_001898_240 Hb_003682_030 Hb_003682_030 Hb_002228_110--Hb_003682_030 Hb_006261_090 Hb_006261_090 Hb_002228_110--Hb_006261_090 Hb_002228_110--Hb_001671_040 Hb_001225_030 Hb_001225_030 Hb_002228_110--Hb_001225_030 Hb_000661_140 Hb_000661_140 Hb_000836_430--Hb_000661_140 Hb_002026_140 Hb_002026_140 Hb_000836_430--Hb_002026_140 Hb_003621_020 Hb_003621_020 Hb_000836_430--Hb_003621_020 Hb_000836_430--Hb_004128_200 Hb_000958_130 Hb_000958_130 Hb_000836_430--Hb_000958_130 Hb_000836_430--Hb_001898_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.7015 36.6553 69.9018 8.91658 34.1016 26.5577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2382 28.7155 8.47545 9.02038 18.6602

CAGE analysis