Hb_000077_010

Information

Type -
Description -
Location Contig77: 7633-17168
Sequence    

Annotation

kegg
ID vvi:100247253
description probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2
nr
ID CBI21868.3
description unnamed protein product [Vitis vinifera]
swissprot
ID E0CTF3
description Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2 OS=Vitis vinifera GN=VIT_12s0028g03470 PE=2 SV=2
trembl
ID A0A061E327
description Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS=Theobroma cacao GN=TCM_046722 PE=3 SV=1
Gene Ontology
ID GO:0009507
description probable bifunctional methylthioribulose-1-phosphate dehydratase enolase-phosphatase e1 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57553: 8504-11623 , PASA_asmbl_57554: 8536-11634 , PASA_asmbl_57555: 12840-16269 , PASA_asmbl_57556: 15026-15585 , PASA_asmbl_57557: 16362-17003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000436_100 0.0891932333 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
3 Hb_016734_090 0.0953454151 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
4 Hb_002739_130 0.0958999482 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
5 Hb_004079_120 0.0966205395 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
6 Hb_000156_160 0.0982850362 - - PREDICTED: urease accessory protein G [Jatropha curcas]
7 Hb_006658_030 0.0991547767 - - hypothetical protein JCGZ_04047 [Jatropha curcas]
8 Hb_003849_040 0.1039733624 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
9 Hb_000098_140 0.1049595007 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
10 Hb_009265_050 0.1057303869 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
11 Hb_000287_050 0.1113295121 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
12 Hb_001213_130 0.1133780182 - - PREDICTED: fructokinase-like 1, chloroplastic [Jatropha curcas]
13 Hb_039605_010 0.1143437183 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
14 Hb_002890_150 0.1167535592 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
15 Hb_044155_010 0.1168797142 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
16 Hb_000661_020 0.1184805123 - - BnaC08g27190D [Brassica napus]
17 Hb_002232_190 0.1192359752 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002092_100 0.119538471 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
19 Hb_003292_050 0.1210271863 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
20 Hb_000963_130 0.1228506414 - - RNA m5u methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000077_010 Hb_000077_010 Hb_000436_100 Hb_000436_100 Hb_000077_010--Hb_000436_100 Hb_016734_090 Hb_016734_090 Hb_000077_010--Hb_016734_090 Hb_002739_130 Hb_002739_130 Hb_000077_010--Hb_002739_130 Hb_004079_120 Hb_004079_120 Hb_000077_010--Hb_004079_120 Hb_000156_160 Hb_000156_160 Hb_000077_010--Hb_000156_160 Hb_006658_030 Hb_006658_030 Hb_000077_010--Hb_006658_030 Hb_000424_020 Hb_000424_020 Hb_000436_100--Hb_000424_020 Hb_029142_030 Hb_029142_030 Hb_000436_100--Hb_029142_030 Hb_001930_030 Hb_001930_030 Hb_000436_100--Hb_001930_030 Hb_000003_300 Hb_000003_300 Hb_000436_100--Hb_000003_300 Hb_002255_040 Hb_002255_040 Hb_000436_100--Hb_002255_040 Hb_016734_090--Hb_002739_130 Hb_011918_050 Hb_011918_050 Hb_016734_090--Hb_011918_050 Hb_006452_160 Hb_006452_160 Hb_016734_090--Hb_006452_160 Hb_001269_200 Hb_001269_200 Hb_016734_090--Hb_001269_200 Hb_000563_330 Hb_000563_330 Hb_016734_090--Hb_000563_330 Hb_000661_020 Hb_000661_020 Hb_016734_090--Hb_000661_020 Hb_002739_130--Hb_006452_160 Hb_002739_130--Hb_000563_330 Hb_002739_130--Hb_000661_020 Hb_002739_130--Hb_011918_050 Hb_000679_340 Hb_000679_340 Hb_002739_130--Hb_000679_340 Hb_000963_130 Hb_000963_130 Hb_004079_120--Hb_000963_130 Hb_004079_120--Hb_002739_130 Hb_004079_120--Hb_006452_160 Hb_004079_120--Hb_000156_160 Hb_004079_120--Hb_016734_090 Hb_002092_100 Hb_002092_100 Hb_000156_160--Hb_002092_100 Hb_005288_080 Hb_005288_080 Hb_000156_160--Hb_005288_080 Hb_000922_020 Hb_000922_020 Hb_000156_160--Hb_000922_020 Hb_000156_160--Hb_016734_090 Hb_000156_160--Hb_000661_020 Hb_000156_160--Hb_011918_050 Hb_001952_120 Hb_001952_120 Hb_006658_030--Hb_001952_120 Hb_105641_010 Hb_105641_010 Hb_006658_030--Hb_105641_010 Hb_007929_080 Hb_007929_080 Hb_006658_030--Hb_007929_080 Hb_006658_030--Hb_000661_020 Hb_002311_310 Hb_002311_310 Hb_006658_030--Hb_002311_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2595 7.5847 15.6481 2.9081 12.0254 6.89368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44908 3.78331 2.84993 3.80498 6.83808

CAGE analysis