Hb_006658_030

Information

Type -
Description -
Location Contig6658: 27205-28086
Sequence    

Annotation

kegg
ID rcu:RCOM_0623850
description hypothetical protein
nr
ID KDP38694.1
description hypothetical protein JCGZ_04047 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04047 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53240: 27750-47667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006658_030 0.0 - - hypothetical protein JCGZ_04047 [Jatropha curcas]
2 Hb_000077_010 0.0991547767 - - unnamed protein product [Vitis vinifera]
3 Hb_001952_120 0.1063538803 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
4 Hb_105641_010 0.1083929324 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
5 Hb_007929_080 0.1105641918 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
6 Hb_000661_020 0.1138831553 - - BnaC08g27190D [Brassica napus]
7 Hb_002311_310 0.1141733758 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
8 Hb_009265_050 0.1159871054 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
9 Hb_002739_130 0.1163993024 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
10 Hb_000156_160 0.116588799 - - PREDICTED: urease accessory protein G [Jatropha curcas]
11 Hb_006658_040 0.1174555063 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
12 Hb_000023_320 0.1175613435 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000963_130 0.1183088532 - - RNA m5u methyltransferase, putative [Ricinus communis]
14 Hb_002027_060 0.1216756441 - - PREDICTED: exosome complex component RRP4 [Jatropha curcas]
15 Hb_002571_030 0.1217701522 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
16 Hb_000076_260 0.1229304769 - - hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712]
17 Hb_000922_140 0.1239078993 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
18 Hb_000098_140 0.124818667 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
19 Hb_002092_100 0.1263942874 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
20 Hb_001636_050 0.1272076986 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]

Gene co-expression network

sample Hb_006658_030 Hb_006658_030 Hb_000077_010 Hb_000077_010 Hb_006658_030--Hb_000077_010 Hb_001952_120 Hb_001952_120 Hb_006658_030--Hb_001952_120 Hb_105641_010 Hb_105641_010 Hb_006658_030--Hb_105641_010 Hb_007929_080 Hb_007929_080 Hb_006658_030--Hb_007929_080 Hb_000661_020 Hb_000661_020 Hb_006658_030--Hb_000661_020 Hb_002311_310 Hb_002311_310 Hb_006658_030--Hb_002311_310 Hb_000436_100 Hb_000436_100 Hb_000077_010--Hb_000436_100 Hb_016734_090 Hb_016734_090 Hb_000077_010--Hb_016734_090 Hb_002739_130 Hb_002739_130 Hb_000077_010--Hb_002739_130 Hb_004079_120 Hb_004079_120 Hb_000077_010--Hb_004079_120 Hb_000156_160 Hb_000156_160 Hb_000077_010--Hb_000156_160 Hb_001140_030 Hb_001140_030 Hb_001952_120--Hb_001140_030 Hb_005965_030 Hb_005965_030 Hb_001952_120--Hb_005965_030 Hb_000922_020 Hb_000922_020 Hb_001952_120--Hb_000922_020 Hb_001636_050 Hb_001636_050 Hb_001952_120--Hb_001636_050 Hb_010998_040 Hb_010998_040 Hb_001952_120--Hb_010998_040 Hb_002027_060 Hb_002027_060 Hb_001952_120--Hb_002027_060 Hb_105641_010--Hb_007929_080 Hb_158604_010 Hb_158604_010 Hb_105641_010--Hb_158604_010 Hb_001021_200 Hb_001021_200 Hb_105641_010--Hb_001021_200 Hb_003929_140 Hb_003929_140 Hb_105641_010--Hb_003929_140 Hb_000028_510 Hb_000028_510 Hb_105641_010--Hb_000028_510 Hb_143766_110 Hb_143766_110 Hb_105641_010--Hb_143766_110 Hb_002571_030 Hb_002571_030 Hb_007929_080--Hb_002571_030 Hb_009771_110 Hb_009771_110 Hb_007929_080--Hb_009771_110 Hb_000523_080 Hb_000523_080 Hb_007929_080--Hb_000523_080 Hb_001405_190 Hb_001405_190 Hb_007929_080--Hb_001405_190 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_006618_090 Hb_006618_090 Hb_007929_080--Hb_006618_090 Hb_000661_020--Hb_003929_140 Hb_004631_190 Hb_004631_190 Hb_000661_020--Hb_004631_190 Hb_000661_020--Hb_002739_130 Hb_000661_020--Hb_016734_090 Hb_000661_020--Hb_000922_020 Hb_000661_020--Hb_007929_080 Hb_027472_120 Hb_027472_120 Hb_002311_310--Hb_027472_120 Hb_001005_030 Hb_001005_030 Hb_002311_310--Hb_001005_030 Hb_002311_310--Hb_000922_020 Hb_032202_080 Hb_032202_080 Hb_002311_310--Hb_032202_080 Hb_001089_070 Hb_001089_070 Hb_002311_310--Hb_001089_070 Hb_002311_310--Hb_007929_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4477 13.3992 19.6937 3.7604 20.6074 8.00921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.93076 3.73737 6.1353 10.0095 9.65246

CAGE analysis