Hb_004079_120

Information

Type -
Description -
Location Contig4079: 78870-81434
Sequence    

Annotation

kegg
ID pop:POPTR_0018s05810g
description hypothetical protein
nr
ID XP_012076675.1
description PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07234 PE=4 SV=1
Gene Ontology
ID GO:0016874
description trna 2-thiocytidine biosynthesis

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40369: 78907-81376 , PASA_asmbl_40371: 80609-80836 , PASA_asmbl_40372: 79986-81057 , PASA_asmbl_40373: 79676-79806 , PASA_asmbl_40374: 81902-84424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004079_120 0.0 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
2 Hb_000963_130 0.082555524 - - RNA m5u methyltransferase, putative [Ricinus communis]
3 Hb_002739_130 0.0851359618 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
4 Hb_006452_160 0.0951637041 - - structural constituent of ribosome, putative [Ricinus communis]
5 Hb_000077_010 0.0966205395 - - unnamed protein product [Vitis vinifera]
6 Hb_000156_160 0.0988408908 - - PREDICTED: urease accessory protein G [Jatropha curcas]
7 Hb_016734_090 0.1011559349 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
8 Hb_032202_230 0.1013222217 - - peroxisomal biogenesis factor, putative [Ricinus communis]
9 Hb_001652_080 0.1050145856 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
10 Hb_008103_080 0.1056123366 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
11 Hb_011918_050 0.106380419 - - -
12 Hb_000679_340 0.1075448543 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
13 Hb_003638_010 0.1099056268 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
14 Hb_000563_330 0.110447946 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_002092_100 0.1129708367 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
16 Hb_000098_140 0.1134414991 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
17 Hb_002374_260 0.1141023789 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
18 Hb_002571_030 0.1142733057 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
19 Hb_005288_080 0.115904398 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008887_020 0.117623269 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]

Gene co-expression network

sample Hb_004079_120 Hb_004079_120 Hb_000963_130 Hb_000963_130 Hb_004079_120--Hb_000963_130 Hb_002739_130 Hb_002739_130 Hb_004079_120--Hb_002739_130 Hb_006452_160 Hb_006452_160 Hb_004079_120--Hb_006452_160 Hb_000077_010 Hb_000077_010 Hb_004079_120--Hb_000077_010 Hb_000156_160 Hb_000156_160 Hb_004079_120--Hb_000156_160 Hb_016734_090 Hb_016734_090 Hb_004079_120--Hb_016734_090 Hb_028872_120 Hb_028872_120 Hb_000963_130--Hb_028872_120 Hb_005332_020 Hb_005332_020 Hb_000963_130--Hb_005332_020 Hb_008887_020 Hb_008887_020 Hb_000963_130--Hb_008887_020 Hb_000922_140 Hb_000922_140 Hb_000963_130--Hb_000922_140 Hb_022256_060 Hb_022256_060 Hb_000963_130--Hb_022256_060 Hb_002739_130--Hb_006452_160 Hb_002739_130--Hb_016734_090 Hb_000563_330 Hb_000563_330 Hb_002739_130--Hb_000563_330 Hb_000661_020 Hb_000661_020 Hb_002739_130--Hb_000661_020 Hb_011918_050 Hb_011918_050 Hb_002739_130--Hb_011918_050 Hb_000679_340 Hb_000679_340 Hb_002739_130--Hb_000679_340 Hb_006452_160--Hb_000563_330 Hb_002045_150 Hb_002045_150 Hb_006452_160--Hb_002045_150 Hb_005188_060 Hb_005188_060 Hb_006452_160--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_006452_160--Hb_000140_330 Hb_006452_160--Hb_016734_090 Hb_000436_100 Hb_000436_100 Hb_000077_010--Hb_000436_100 Hb_000077_010--Hb_016734_090 Hb_000077_010--Hb_002739_130 Hb_000077_010--Hb_000156_160 Hb_006658_030 Hb_006658_030 Hb_000077_010--Hb_006658_030 Hb_002092_100 Hb_002092_100 Hb_000156_160--Hb_002092_100 Hb_005288_080 Hb_005288_080 Hb_000156_160--Hb_005288_080 Hb_000922_020 Hb_000922_020 Hb_000156_160--Hb_000922_020 Hb_000156_160--Hb_016734_090 Hb_000156_160--Hb_000661_020 Hb_000156_160--Hb_011918_050 Hb_016734_090--Hb_011918_050 Hb_001269_200 Hb_001269_200 Hb_016734_090--Hb_001269_200 Hb_016734_090--Hb_000563_330 Hb_016734_090--Hb_000661_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.5669 80.1513 114.408 19.2677 86.5372 86.1331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.5025 30.0218 18.394 38.6533 60.0801

CAGE analysis