Hb_000963_130

Information

Type -
Description -
Location Contig963: 86951-93843
Sequence    

Annotation

kegg
ID rcu:RCOM_0154700
description RNA m5u methyltransferase, putative
nr
ID XP_002530289.1
description RNA m5u methyltransferase, putative [Ricinus communis]
swissprot
ID Q8L7S3
description Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana GN=At2g28450 PE=1 SV=1
trembl
ID B9SWC0
description RNA m5u methyltransferase, putative OS=Ricinus communis GN=RCOM_0154700 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger ccch domain-containing protein 24 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63828: 87267-89402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_130 0.0 - - RNA m5u methyltransferase, putative [Ricinus communis]
2 Hb_028872_120 0.0783508724 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
3 Hb_005332_020 0.0813708788 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_008887_020 0.0825293162 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
5 Hb_004079_120 0.082555524 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
6 Hb_000922_140 0.0908966999 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
7 Hb_022256_060 0.0915389569 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
8 Hb_000849_020 0.0945119698 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
9 Hb_002739_130 0.0946913552 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
10 Hb_007943_120 0.0953202921 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
11 Hb_075745_020 0.0961133242 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
12 Hb_003929_140 0.0962054905 - - DNA binding protein, putative [Ricinus communis]
13 Hb_005188_060 0.0965491086 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_000661_020 0.0973304057 - - BnaC08g27190D [Brassica napus]
15 Hb_006452_160 0.0988786284 - - structural constituent of ribosome, putative [Ricinus communis]
16 Hb_008103_080 0.0996025856 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
17 Hb_000679_340 0.0996431188 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
18 Hb_007929_080 0.0996786317 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
19 Hb_001652_080 0.1000419326 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
20 Hb_002571_030 0.1005180943 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]

Gene co-expression network

sample Hb_000963_130 Hb_000963_130 Hb_028872_120 Hb_028872_120 Hb_000963_130--Hb_028872_120 Hb_005332_020 Hb_005332_020 Hb_000963_130--Hb_005332_020 Hb_008887_020 Hb_008887_020 Hb_000963_130--Hb_008887_020 Hb_004079_120 Hb_004079_120 Hb_000963_130--Hb_004079_120 Hb_000922_140 Hb_000922_140 Hb_000963_130--Hb_000922_140 Hb_022256_060 Hb_022256_060 Hb_000963_130--Hb_022256_060 Hb_007943_120 Hb_007943_120 Hb_028872_120--Hb_007943_120 Hb_000329_130 Hb_000329_130 Hb_028872_120--Hb_000329_130 Hb_017895_020 Hb_017895_020 Hb_028872_120--Hb_017895_020 Hb_002301_270 Hb_002301_270 Hb_028872_120--Hb_002301_270 Hb_001178_150 Hb_001178_150 Hb_028872_120--Hb_001178_150 Hb_010315_090 Hb_010315_090 Hb_028872_120--Hb_010315_090 Hb_001953_150 Hb_001953_150 Hb_005332_020--Hb_001953_150 Hb_002422_050 Hb_002422_050 Hb_005332_020--Hb_002422_050 Hb_005332_020--Hb_008887_020 Hb_000152_260 Hb_000152_260 Hb_005332_020--Hb_000152_260 Hb_001143_250 Hb_001143_250 Hb_005332_020--Hb_001143_250 Hb_002374_260 Hb_002374_260 Hb_005332_020--Hb_002374_260 Hb_008887_020--Hb_022256_060 Hb_000679_340 Hb_000679_340 Hb_008887_020--Hb_000679_340 Hb_027760_080 Hb_027760_080 Hb_008887_020--Hb_027760_080 Hb_000914_120 Hb_000914_120 Hb_008887_020--Hb_000914_120 Hb_000230_090 Hb_000230_090 Hb_008887_020--Hb_000230_090 Hb_002739_130 Hb_002739_130 Hb_004079_120--Hb_002739_130 Hb_006452_160 Hb_006452_160 Hb_004079_120--Hb_006452_160 Hb_000077_010 Hb_000077_010 Hb_004079_120--Hb_000077_010 Hb_000156_160 Hb_000156_160 Hb_004079_120--Hb_000156_160 Hb_016734_090 Hb_016734_090 Hb_004079_120--Hb_016734_090 Hb_000922_140--Hb_001953_150 Hb_000922_140--Hb_005332_020 Hb_006658_040 Hb_006658_040 Hb_000922_140--Hb_006658_040 Hb_004429_160 Hb_004429_160 Hb_000922_140--Hb_004429_160 Hb_001427_190 Hb_001427_190 Hb_000922_140--Hb_001427_190 Hb_001307_080 Hb_001307_080 Hb_000922_140--Hb_001307_080 Hb_022256_060--Hb_000679_340 Hb_008695_110 Hb_008695_110 Hb_022256_060--Hb_008695_110 Hb_022256_060--Hb_000230_090 Hb_000160_350 Hb_000160_350 Hb_022256_060--Hb_000160_350 Hb_001821_160 Hb_001821_160 Hb_022256_060--Hb_001821_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2271 23.7452 22.9951 5.16955 29.2233 24.656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.40199 9.56638 9.4331 12.4221 18.8179

CAGE analysis