Hb_000436_100

Information

Type -
Description -
Location Contig436: 196998-199865
Sequence    

Annotation

kegg
ID rcu:RCOM_0977470
description hypothetical protein
nr
ID XP_012077726.1
description PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
swissprot
ID G5DBJ0
description Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Nicotiana benthamiana GN=CPP1 PE=1 SV=1
trembl
ID A0A067KAQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13083 PE=4 SV=1
Gene Ontology
ID GO:0016020
description PREDICTED: uncharacterized protein LOC105638514

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42456: 196910-199804 , PASA_asmbl_42458: 198575-198985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000436_100 0.0 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
2 Hb_000424_020 0.0834823061 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
3 Hb_000077_010 0.0891932333 - - unnamed protein product [Vitis vinifera]
4 Hb_029142_030 0.0988106927 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
5 Hb_001930_030 0.1006327587 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
6 Hb_000003_300 0.1051848497 - - PREDICTED: uncharacterized protein LOC105631182 [Jatropha curcas]
7 Hb_002255_040 0.1089997121 - - PREDICTED: biotin synthase [Jatropha curcas]
8 Hb_003849_040 0.109050313 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
9 Hb_005731_110 0.1109893032 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
10 Hb_011249_030 0.1162188926 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
11 Hb_178968_140 0.1175811009 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000175_590 0.1176096472 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
13 Hb_000098_140 0.1182788133 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
14 Hb_000445_070 0.1185793456 - - PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
15 Hb_000287_050 0.119967574 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
16 Hb_001105_050 0.1205806482 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
17 Hb_000390_310 0.1207122416 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
18 Hb_015292_040 0.1211251739 - - PREDICTED: myb-like protein X [Jatropha curcas]
19 Hb_004079_120 0.123284721 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
20 Hb_005975_010 0.1234706558 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000436_100 Hb_000436_100 Hb_000424_020 Hb_000424_020 Hb_000436_100--Hb_000424_020 Hb_000077_010 Hb_000077_010 Hb_000436_100--Hb_000077_010 Hb_029142_030 Hb_029142_030 Hb_000436_100--Hb_029142_030 Hb_001930_030 Hb_001930_030 Hb_000436_100--Hb_001930_030 Hb_000003_300 Hb_000003_300 Hb_000436_100--Hb_000003_300 Hb_002255_040 Hb_002255_040 Hb_000436_100--Hb_002255_040 Hb_000424_020--Hb_029142_030 Hb_000424_020--Hb_002255_040 Hb_011249_030 Hb_011249_030 Hb_000424_020--Hb_011249_030 Hb_000424_020--Hb_001930_030 Hb_000424_020--Hb_000003_300 Hb_016734_090 Hb_016734_090 Hb_000077_010--Hb_016734_090 Hb_002739_130 Hb_002739_130 Hb_000077_010--Hb_002739_130 Hb_004079_120 Hb_004079_120 Hb_000077_010--Hb_004079_120 Hb_000156_160 Hb_000156_160 Hb_000077_010--Hb_000156_160 Hb_006658_030 Hb_006658_030 Hb_000077_010--Hb_006658_030 Hb_005975_010 Hb_005975_010 Hb_029142_030--Hb_005975_010 Hb_029142_030--Hb_011249_030 Hb_000002_120 Hb_000002_120 Hb_029142_030--Hb_000002_120 Hb_029142_030--Hb_002255_040 Hb_000340_130 Hb_000340_130 Hb_029142_030--Hb_000340_130 Hb_006555_040 Hb_006555_040 Hb_001930_030--Hb_006555_040 Hb_005731_110 Hb_005731_110 Hb_001930_030--Hb_005731_110 Hb_000445_070 Hb_000445_070 Hb_001930_030--Hb_000445_070 Hb_015292_040 Hb_015292_040 Hb_001930_030--Hb_015292_040 Hb_004994_080 Hb_004994_080 Hb_001930_030--Hb_004994_080 Hb_004128_200 Hb_004128_200 Hb_000003_300--Hb_004128_200 Hb_005389_100 Hb_005389_100 Hb_000003_300--Hb_005389_100 Hb_002228_110 Hb_002228_110 Hb_000003_300--Hb_002228_110 Hb_000836_430 Hb_000836_430 Hb_000003_300--Hb_000836_430 Hb_002255_040--Hb_006555_040 Hb_002255_040--Hb_011249_030 Hb_028207_020 Hb_028207_020 Hb_002255_040--Hb_028207_020 Hb_003581_210 Hb_003581_210 Hb_002255_040--Hb_003581_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.8441 53.795 146.765 24.6264 73.5318 54.2294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1249 39.8548 16.3672 19.9006 64.6949

CAGE analysis