Hb_000445_070

Information

Type -
Description -
Location Contig445: 74736-80455
Sequence    

Annotation

kegg
ID rcu:RCOM_0562130
description hypothetical protein
nr
ID XP_012078321.1
description PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NU80
description JMS09K11.8 protein OS=Jatropha curcas GN=JMS09K11.8 PE=4 SV=1
Gene Ontology
ID GO:0009507
description plastid transcriptionally active 6 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42872: 74920-80635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_070 0.0 - - PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
2 Hb_000085_190 0.0693165003 - - FtsZ1 protein [Manihot esculenta]
3 Hb_001232_150 0.0769908153 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
4 Hb_000300_180 0.0891080563 - - transcription initiation factor brf1, putative [Ricinus communis]
5 Hb_001930_030 0.0964889979 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
6 Hb_003225_020 0.0994082547 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
7 Hb_021650_010 0.1016387988 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
8 Hb_000640_160 0.1020839207 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
9 Hb_005975_010 0.1029838908 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
10 Hb_000011_240 0.1045441187 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
11 Hb_000757_030 0.1052642308 - - radical sam protein, putative [Ricinus communis]
12 Hb_005731_110 0.1070031047 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
13 Hb_005162_110 0.1079688561 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
14 Hb_000224_150 0.1082405018 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]
15 Hb_000532_100 0.1133172993 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
16 Hb_005389_170 0.1144106034 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
17 Hb_007821_020 0.1157894064 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
18 Hb_010174_090 0.1176643133 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
19 Hb_000436_100 0.1185793456 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
20 Hb_006120_040 0.1193154123 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_000445_070 Hb_000445_070 Hb_000085_190 Hb_000085_190 Hb_000445_070--Hb_000085_190 Hb_001232_150 Hb_001232_150 Hb_000445_070--Hb_001232_150 Hb_000300_180 Hb_000300_180 Hb_000445_070--Hb_000300_180 Hb_001930_030 Hb_001930_030 Hb_000445_070--Hb_001930_030 Hb_003225_020 Hb_003225_020 Hb_000445_070--Hb_003225_020 Hb_021650_010 Hb_021650_010 Hb_000445_070--Hb_021650_010 Hb_006120_040 Hb_006120_040 Hb_000085_190--Hb_006120_040 Hb_005731_110 Hb_005731_110 Hb_000085_190--Hb_005731_110 Hb_000757_030 Hb_000757_030 Hb_000085_190--Hb_000757_030 Hb_005162_110 Hb_005162_110 Hb_000085_190--Hb_005162_110 Hb_000640_160 Hb_000640_160 Hb_000085_190--Hb_000640_160 Hb_001232_150--Hb_021650_010 Hb_000051_060 Hb_000051_060 Hb_001232_150--Hb_000051_060 Hb_001232_150--Hb_000640_160 Hb_001232_150--Hb_003225_020 Hb_001232_150--Hb_005731_110 Hb_000300_180--Hb_000757_030 Hb_003029_070 Hb_003029_070 Hb_000300_180--Hb_003029_070 Hb_000300_180--Hb_000640_160 Hb_002876_220 Hb_002876_220 Hb_000300_180--Hb_002876_220 Hb_000190_030 Hb_000190_030 Hb_000300_180--Hb_000190_030 Hb_000304_070 Hb_000304_070 Hb_000300_180--Hb_000304_070 Hb_006555_040 Hb_006555_040 Hb_001930_030--Hb_006555_040 Hb_001930_030--Hb_005731_110 Hb_015292_040 Hb_015292_040 Hb_001930_030--Hb_015292_040 Hb_004994_080 Hb_004994_080 Hb_001930_030--Hb_004994_080 Hb_000436_100 Hb_000436_100 Hb_001930_030--Hb_000436_100 Hb_003225_020--Hb_000640_160 Hb_007821_020 Hb_007821_020 Hb_003225_020--Hb_007821_020 Hb_031284_010 Hb_031284_010 Hb_003225_020--Hb_031284_010 Hb_001619_050 Hb_001619_050 Hb_003225_020--Hb_001619_050 Hb_007283_010 Hb_007283_010 Hb_003225_020--Hb_007283_010 Hb_003225_020--Hb_005731_110 Hb_003752_070 Hb_003752_070 Hb_021650_010--Hb_003752_070 Hb_021650_010--Hb_005162_110 Hb_021650_010--Hb_000051_060 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_001195_270 Hb_001195_270 Hb_021650_010--Hb_001195_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2638 18.9363 56.7984 9.15762 19.6716 17.8688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2962 18.9391 13.7783 15.0363 37.0667

CAGE analysis