Hb_001232_150

Information

Type -
Description -
Location Contig1232: 104582-109459
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17980g
description POPTRDRAFT_181051; hypothetical protein
nr
ID XP_012073328.1
description PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
swissprot
ID Q9M7J4
description MAR-binding filament-like protein 1-1 OS=Nicotiana tabacum GN=MFP1-1 PE=2 SV=1
trembl
ID A0A067KLV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06257 PE=4 SV=1
Gene Ontology
ID GO:0009535
description mar-binding filament-like protein 1-1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07065: 104572-108089
cDNA
(Sanger)
(ID:Location)		 048_F01.ab1: 104572-106986

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_150 0.0 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
2 Hb_021650_010 0.0691128471 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
3 Hb_000445_070 0.0769908153 - - PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
4 Hb_000051_060 0.0927082369 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000640_160 0.097915 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
6 Hb_003225_020 0.1010370786 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
7 Hb_005731_110 0.1042071806 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
8 Hb_000300_180 0.1069544691 - - transcription initiation factor brf1, putative [Ricinus communis]
9 Hb_005162_110 0.1074418727 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
10 Hb_000085_190 0.1096380024 - - FtsZ1 protein [Manihot esculenta]
11 Hb_002876_220 0.1105373431 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
12 Hb_003752_070 0.1113543964 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
13 Hb_003029_070 0.1153137222 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_066967_020 0.1166051749 - - RAB6-interacting protein, putative [Ricinus communis]
15 Hb_001195_270 0.1173950512 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
16 Hb_001619_050 0.117806705 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
17 Hb_000802_130 0.1190881727 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
18 Hb_007821_020 0.1199297713 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
19 Hb_005389_170 0.12150417 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
20 Hb_000445_140 0.1216646992 - - hypothetical protein RCOM_0561550 [Ricinus communis]

Gene co-expression network

sample Hb_001232_150 Hb_001232_150 Hb_021650_010 Hb_021650_010 Hb_001232_150--Hb_021650_010 Hb_000445_070 Hb_000445_070 Hb_001232_150--Hb_000445_070 Hb_000051_060 Hb_000051_060 Hb_001232_150--Hb_000051_060 Hb_000640_160 Hb_000640_160 Hb_001232_150--Hb_000640_160 Hb_003225_020 Hb_003225_020 Hb_001232_150--Hb_003225_020 Hb_005731_110 Hb_005731_110 Hb_001232_150--Hb_005731_110 Hb_003752_070 Hb_003752_070 Hb_021650_010--Hb_003752_070 Hb_005162_110 Hb_005162_110 Hb_021650_010--Hb_005162_110 Hb_021650_010--Hb_000051_060 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_001195_270 Hb_001195_270 Hb_021650_010--Hb_001195_270 Hb_000085_190 Hb_000085_190 Hb_000445_070--Hb_000085_190 Hb_000300_180 Hb_000300_180 Hb_000445_070--Hb_000300_180 Hb_001930_030 Hb_001930_030 Hb_000445_070--Hb_001930_030 Hb_000445_070--Hb_003225_020 Hb_000445_070--Hb_021650_010 Hb_001935_100 Hb_001935_100 Hb_000051_060--Hb_001935_100 Hb_000051_060--Hb_005162_110 Hb_000051_060--Hb_003752_070 Hb_002876_220 Hb_002876_220 Hb_000051_060--Hb_002876_220 Hb_000640_160--Hb_003225_020 Hb_000640_160--Hb_005731_110 Hb_001619_050 Hb_001619_050 Hb_000640_160--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_000640_160--Hb_032202_080 Hb_004096_240 Hb_004096_240 Hb_000640_160--Hb_004096_240 Hb_138435_010 Hb_138435_010 Hb_000640_160--Hb_138435_010 Hb_007821_020 Hb_007821_020 Hb_003225_020--Hb_007821_020 Hb_031284_010 Hb_031284_010 Hb_003225_020--Hb_031284_010 Hb_003225_020--Hb_001619_050 Hb_007283_010 Hb_007283_010 Hb_003225_020--Hb_007283_010 Hb_003225_020--Hb_005731_110 Hb_000663_020 Hb_000663_020 Hb_005731_110--Hb_000663_020 Hb_000959_220 Hb_000959_220 Hb_005731_110--Hb_000959_220 Hb_005731_110--Hb_005162_110 Hb_065755_030 Hb_065755_030 Hb_005731_110--Hb_065755_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.249 9.24301 36.3612 7.79778 13.2362 15.9369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27172 11.8666 10.3449 5.8757 27.6881

CAGE analysis