Hb_002876_220

Information

Type -
Description -
Location Contig2876: 205637-211960
Sequence    

Annotation

kegg
ID pop:POPTR_0019s11500g
description POPTRDRAFT_914434; hypothetical protein
nr
ID XP_012072024.1
description PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
swissprot
ID O78458
description Uncharacterized protein ycf37 OS=Guillardia theta GN=ycf37 PE=3 SV=1
trembl
ID A0A067L2K4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05384 PE=4 SV=1
Gene Ontology
ID GO:0009507
description tetratricopeptide repeat superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30045: 205762-211966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_220 0.0 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
2 Hb_003029_070 0.0681190891 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000300_180 0.0851480785 - - transcription initiation factor brf1, putative [Ricinus communis]
4 Hb_012022_150 0.0853227829 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
5 Hb_007002_020 0.0905730302 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
6 Hb_000051_060 0.0914610298 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001935_100 0.0936506957 - - structural molecule, putative [Ricinus communis]
8 Hb_004440_020 0.093721991 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
9 Hb_000003_780 0.0970819064 - - hexokinase [Manihot esculenta]
10 Hb_000753_240 0.0982901395 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
11 Hb_000227_170 0.0992416071 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_001700_010 0.1041960578 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
13 Hb_000088_190 0.1046721107 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000690_160 0.1051522812 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
15 Hb_000190_030 0.1053917786 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
16 Hb_004970_190 0.1091435056 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_000640_160 0.1103990415 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
18 Hb_001232_150 0.1105373431 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
19 Hb_107879_010 0.112736719 - - phosphoglycerate mutase, putative [Ricinus communis]
20 Hb_001322_140 0.1127512325 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002876_220 Hb_002876_220 Hb_003029_070 Hb_003029_070 Hb_002876_220--Hb_003029_070 Hb_000300_180 Hb_000300_180 Hb_002876_220--Hb_000300_180 Hb_012022_150 Hb_012022_150 Hb_002876_220--Hb_012022_150 Hb_007002_020 Hb_007002_020 Hb_002876_220--Hb_007002_020 Hb_000051_060 Hb_000051_060 Hb_002876_220--Hb_000051_060 Hb_001935_100 Hb_001935_100 Hb_002876_220--Hb_001935_100 Hb_000753_240 Hb_000753_240 Hb_003029_070--Hb_000753_240 Hb_003029_070--Hb_000300_180 Hb_003029_070--Hb_012022_150 Hb_004970_190 Hb_004970_190 Hb_003029_070--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_003029_070--Hb_000804_040 Hb_000757_030 Hb_000757_030 Hb_000300_180--Hb_000757_030 Hb_000640_160 Hb_000640_160 Hb_000300_180--Hb_000640_160 Hb_000190_030 Hb_000190_030 Hb_000300_180--Hb_000190_030 Hb_000304_070 Hb_000304_070 Hb_000300_180--Hb_000304_070 Hb_022693_140 Hb_022693_140 Hb_012022_150--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_012022_150--Hb_000224_160 Hb_002163_040 Hb_002163_040 Hb_012022_150--Hb_002163_040 Hb_012022_150--Hb_000804_040 Hb_012022_150--Hb_000753_240 Hb_001287_040 Hb_001287_040 Hb_007002_020--Hb_001287_040 Hb_006132_090 Hb_006132_090 Hb_007002_020--Hb_006132_090 Hb_001900_140 Hb_001900_140 Hb_007002_020--Hb_001900_140 Hb_000003_780 Hb_000003_780 Hb_007002_020--Hb_000003_780 Hb_000811_070 Hb_000811_070 Hb_007002_020--Hb_000811_070 Hb_007975_060 Hb_007975_060 Hb_007002_020--Hb_007975_060 Hb_000051_060--Hb_001935_100 Hb_005162_110 Hb_005162_110 Hb_000051_060--Hb_005162_110 Hb_003752_070 Hb_003752_070 Hb_000051_060--Hb_003752_070 Hb_021650_010 Hb_021650_010 Hb_000051_060--Hb_021650_010 Hb_001232_150 Hb_001232_150 Hb_000051_060--Hb_001232_150 Hb_000227_170 Hb_000227_170 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_001935_100--Hb_001410_070 Hb_000796_160 Hb_000796_160 Hb_001935_100--Hb_000796_160 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.189 13.2922 52.6391 16.4939 21.4163 23.667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.7317 26.256 27.3915 10.3195 42.4233

CAGE analysis