Hb_000190_030

Information

Type -
Description -
Location Contig190: 39703-63324
Sequence    

Annotation

kegg
ID pxb:103941894
description BEACH domain-containing protein lvsA-like
nr
ID XP_009350371.1
description PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID M0SEQ7
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18894: 61202-61541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_030 0.0 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
2 Hb_000300_180 0.0869389614 - - transcription initiation factor brf1, putative [Ricinus communis]
3 Hb_003038_200 0.0880818054 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
4 Hb_003029_070 0.0901128717 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_071188_010 0.0910157959 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
6 Hb_000062_370 0.0934403627 - - beta-ketoacyl-ACP reductase [Vernicia fordii]
7 Hb_000224_160 0.0941409855 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_002241_010 0.0953214239 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
9 Hb_000804_040 0.0978444508 - - protein with unknown function [Ricinus communis]
10 Hb_000181_240 0.0980164081 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
11 Hb_012022_150 0.0983752542 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
12 Hb_000753_240 0.1038402316 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
13 Hb_003939_050 0.1039952495 - - protein with unknown function [Ricinus communis]
14 Hb_002876_220 0.1053917786 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
15 Hb_001824_080 0.1055714072 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
16 Hb_007765_100 0.1064705591 - - PREDICTED: helicase SKI2W [Jatropha curcas]
17 Hb_002592_060 0.108342575 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022693_140 0.1086082872 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
19 Hb_000227_170 0.1096073542 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_000174_170 0.1099286195 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000190_030 Hb_000190_030 Hb_000300_180 Hb_000300_180 Hb_000190_030--Hb_000300_180 Hb_003038_200 Hb_003038_200 Hb_000190_030--Hb_003038_200 Hb_003029_070 Hb_003029_070 Hb_000190_030--Hb_003029_070 Hb_071188_010 Hb_071188_010 Hb_000190_030--Hb_071188_010 Hb_000062_370 Hb_000062_370 Hb_000190_030--Hb_000062_370 Hb_000224_160 Hb_000224_160 Hb_000190_030--Hb_000224_160 Hb_000757_030 Hb_000757_030 Hb_000300_180--Hb_000757_030 Hb_000300_180--Hb_003029_070 Hb_000640_160 Hb_000640_160 Hb_000300_180--Hb_000640_160 Hb_002876_220 Hb_002876_220 Hb_000300_180--Hb_002876_220 Hb_000304_070 Hb_000304_070 Hb_000300_180--Hb_000304_070 Hb_003038_200--Hb_071188_010 Hb_004310_140 Hb_004310_140 Hb_003038_200--Hb_004310_140 Hb_000679_020 Hb_000679_020 Hb_003038_200--Hb_000679_020 Hb_000221_140 Hb_000221_140 Hb_003038_200--Hb_000221_140 Hb_000174_170 Hb_000174_170 Hb_003038_200--Hb_000174_170 Hb_001662_140 Hb_001662_140 Hb_003038_200--Hb_001662_140 Hb_000753_240 Hb_000753_240 Hb_003029_070--Hb_000753_240 Hb_003029_070--Hb_002876_220 Hb_012022_150 Hb_012022_150 Hb_003029_070--Hb_012022_150 Hb_004970_190 Hb_004970_190 Hb_003029_070--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_003029_070--Hb_000804_040 Hb_071188_010--Hb_000174_170 Hb_000864_030 Hb_000864_030 Hb_071188_010--Hb_000864_030 Hb_002311_450 Hb_002311_450 Hb_071188_010--Hb_002311_450 Hb_000025_690 Hb_000025_690 Hb_071188_010--Hb_000025_690 Hb_032986_010 Hb_032986_010 Hb_000062_370--Hb_032986_010 Hb_004109_280 Hb_004109_280 Hb_000062_370--Hb_004109_280 Hb_002997_080 Hb_002997_080 Hb_000062_370--Hb_002997_080 Hb_000062_370--Hb_000804_040 Hb_000915_260 Hb_000915_260 Hb_000062_370--Hb_000915_260 Hb_000076_130 Hb_000076_130 Hb_000062_370--Hb_000076_130 Hb_001584_200 Hb_001584_200 Hb_000224_160--Hb_001584_200 Hb_000224_160--Hb_012022_150 Hb_022693_140 Hb_022693_140 Hb_000224_160--Hb_022693_140 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_002163_040 Hb_002163_040 Hb_000224_160--Hb_002163_040 Hb_000184_170 Hb_000184_170 Hb_000224_160--Hb_000184_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0750945 0.0559143 0.137315 0.0433313 0.105424 0.078516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104601 0.067352 0.100755 0.0681388 0.14456

CAGE analysis