Hb_002311_450

Information

Type -
Description -
Location Contig2311: 236437-243135
Sequence    

Annotation

kegg
ID rcu:RCOM_0682080
description protein with unknown function (EC:1.3.99.3)
nr
ID XP_012083983.1
description PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
swissprot
ID Q8RWZ3
description Probable acyl-CoA dehydrogenase IBR3 OS=Arabidopsis thaliana GN=IBR3 PE=1 SV=1
trembl
ID A0A067K6E8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18915 PE=3 SV=1
Gene Ontology
ID GO:0003995
description acyl- dehydrogenase family member 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24338: 236399-243117 , PASA_asmbl_24339: 239048-240826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_450 0.0 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
2 Hb_001821_160 0.084241547 - - serine/arginine rich splicing factor, putative [Ricinus communis]
3 Hb_000864_030 0.0868404343 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
4 Hb_008887_020 0.0890039737 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
5 Hb_000563_420 0.0906811153 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
6 Hb_022256_060 0.0927570744 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
7 Hb_071188_010 0.0933788627 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
8 Hb_000665_160 0.0958104947 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
9 Hb_000160_210 0.0971647329 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000917_320 0.097337076 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
11 Hb_000174_170 0.0978222606 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
12 Hb_027760_080 0.0979105937 - - cytochrome P450, putative [Ricinus communis]
13 Hb_002311_310 0.0997142582 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
14 Hb_132840_010 0.100366244 - - serine/threonine-protein kinase, putative [Ricinus communis]
15 Hb_000160_350 0.1025847694 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
16 Hb_079526_030 0.103572893 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
17 Hb_000834_200 0.1039021461 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
18 Hb_002027_060 0.1045462697 - - PREDICTED: exosome complex component RRP4 [Jatropha curcas]
19 Hb_142368_010 0.1048499941 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
20 Hb_000679_020 0.1066893736 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_450 Hb_002311_450 Hb_001821_160 Hb_001821_160 Hb_002311_450--Hb_001821_160 Hb_000864_030 Hb_000864_030 Hb_002311_450--Hb_000864_030 Hb_008887_020 Hb_008887_020 Hb_002311_450--Hb_008887_020 Hb_000563_420 Hb_000563_420 Hb_002311_450--Hb_000563_420 Hb_022256_060 Hb_022256_060 Hb_002311_450--Hb_022256_060 Hb_071188_010 Hb_071188_010 Hb_002311_450--Hb_071188_010 Hb_004785_100 Hb_004785_100 Hb_001821_160--Hb_004785_100 Hb_000331_110 Hb_000331_110 Hb_001821_160--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_001821_160--Hb_079526_030 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_005588_090 Hb_005588_090 Hb_001821_160--Hb_005588_090 Hb_001821_160--Hb_022256_060 Hb_000679_020 Hb_000679_020 Hb_000864_030--Hb_000679_020 Hb_000174_170 Hb_000174_170 Hb_000864_030--Hb_000174_170 Hb_004800_180 Hb_004800_180 Hb_000864_030--Hb_004800_180 Hb_008059_010 Hb_008059_010 Hb_000864_030--Hb_008059_010 Hb_000864_030--Hb_000563_420 Hb_000115_280 Hb_000115_280 Hb_000864_030--Hb_000115_280 Hb_008887_020--Hb_022256_060 Hb_000679_340 Hb_000679_340 Hb_008887_020--Hb_000679_340 Hb_027760_080 Hb_027760_080 Hb_008887_020--Hb_027760_080 Hb_005332_020 Hb_005332_020 Hb_008887_020--Hb_005332_020 Hb_000914_120 Hb_000914_120 Hb_008887_020--Hb_000914_120 Hb_000230_090 Hb_000230_090 Hb_008887_020--Hb_000230_090 Hb_000563_420--Hb_004800_180 Hb_055235_020 Hb_055235_020 Hb_000563_420--Hb_055235_020 Hb_000563_420--Hb_000115_280 Hb_000318_120 Hb_000318_120 Hb_000563_420--Hb_000318_120 Hb_007044_110 Hb_007044_110 Hb_000563_420--Hb_007044_110 Hb_022256_060--Hb_000679_340 Hb_008695_110 Hb_008695_110 Hb_022256_060--Hb_008695_110 Hb_022256_060--Hb_000230_090 Hb_000160_350 Hb_000160_350 Hb_022256_060--Hb_000160_350 Hb_003038_200 Hb_003038_200 Hb_071188_010--Hb_003038_200 Hb_071188_010--Hb_000174_170 Hb_071188_010--Hb_000864_030 Hb_000190_030 Hb_000190_030 Hb_071188_010--Hb_000190_030 Hb_000025_690 Hb_000025_690 Hb_071188_010--Hb_000025_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.08069 7.57348 9.74477 2.72174 12.1542 6.38875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.06558 5.21248 4.57565 6.48591 8.98948

CAGE analysis