Hb_071188_010

Information

Type -
Description -
Location Contig71188: 9-778
Sequence    

Annotation

kegg
ID pop:POPTR_0013s025001
description hypothetical protein
nr
ID XP_006375769.1
description hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
swissprot
ID Q9FR37
description Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1
trembl
ID U5FUG3
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s025001g PE=4 SV=1
Gene Ontology
ID GO:0005829
description amidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55321: 130-699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071188_010 0.0 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
2 Hb_003038_200 0.0557162199 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
3 Hb_000174_170 0.073546663 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
4 Hb_000864_030 0.085297355 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
5 Hb_000190_030 0.0910157959 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
6 Hb_002311_450 0.0933788627 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
7 Hb_000025_690 0.0938719433 - - spliceosome associated protein, putative [Ricinus communis]
8 Hb_000679_020 0.0938984991 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
9 Hb_000300_180 0.0941687893 - - transcription initiation factor brf1, putative [Ricinus communis]
10 Hb_000834_200 0.0960131074 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
11 Hb_007765_100 0.0963874973 - - PREDICTED: helicase SKI2W [Jatropha curcas]
12 Hb_004310_140 0.0979759638 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000563_420 0.0999992979 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
14 Hb_031284_010 0.1000506851 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
15 Hb_000115_280 0.1014945043 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
16 Hb_002333_060 0.1032424454 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_008059_010 0.1035969923 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
18 Hb_001662_140 0.1074825773 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
19 Hb_005542_130 0.1096159284 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
20 Hb_001824_080 0.1099759233 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_071188_010 Hb_071188_010 Hb_003038_200 Hb_003038_200 Hb_071188_010--Hb_003038_200 Hb_000174_170 Hb_000174_170 Hb_071188_010--Hb_000174_170 Hb_000864_030 Hb_000864_030 Hb_071188_010--Hb_000864_030 Hb_000190_030 Hb_000190_030 Hb_071188_010--Hb_000190_030 Hb_002311_450 Hb_002311_450 Hb_071188_010--Hb_002311_450 Hb_000025_690 Hb_000025_690 Hb_071188_010--Hb_000025_690 Hb_004310_140 Hb_004310_140 Hb_003038_200--Hb_004310_140 Hb_000679_020 Hb_000679_020 Hb_003038_200--Hb_000679_020 Hb_000221_140 Hb_000221_140 Hb_003038_200--Hb_000221_140 Hb_003038_200--Hb_000174_170 Hb_001662_140 Hb_001662_140 Hb_003038_200--Hb_001662_140 Hb_000174_170--Hb_000864_030 Hb_000165_040 Hb_000165_040 Hb_000174_170--Hb_000165_040 Hb_006483_110 Hb_006483_110 Hb_000174_170--Hb_006483_110 Hb_000174_170--Hb_000679_020 Hb_000563_130 Hb_000563_130 Hb_000174_170--Hb_000563_130 Hb_008059_010 Hb_008059_010 Hb_000174_170--Hb_008059_010 Hb_000864_030--Hb_000679_020 Hb_004800_180 Hb_004800_180 Hb_000864_030--Hb_004800_180 Hb_000864_030--Hb_008059_010 Hb_000563_420 Hb_000563_420 Hb_000864_030--Hb_000563_420 Hb_000115_280 Hb_000115_280 Hb_000864_030--Hb_000115_280 Hb_000300_180 Hb_000300_180 Hb_000190_030--Hb_000300_180 Hb_000190_030--Hb_003038_200 Hb_003029_070 Hb_003029_070 Hb_000190_030--Hb_003029_070 Hb_000062_370 Hb_000062_370 Hb_000190_030--Hb_000062_370 Hb_000224_160 Hb_000224_160 Hb_000190_030--Hb_000224_160 Hb_001821_160 Hb_001821_160 Hb_002311_450--Hb_001821_160 Hb_002311_450--Hb_000864_030 Hb_008887_020 Hb_008887_020 Hb_002311_450--Hb_008887_020 Hb_002311_450--Hb_000563_420 Hb_022256_060 Hb_022256_060 Hb_002311_450--Hb_022256_060 Hb_183510_020 Hb_183510_020 Hb_000025_690--Hb_183510_020 Hb_001226_150 Hb_001226_150 Hb_000025_690--Hb_001226_150 Hb_005867_070 Hb_005867_070 Hb_000025_690--Hb_005867_070 Hb_000665_120 Hb_000665_120 Hb_000025_690--Hb_000665_120 Hb_000025_690--Hb_000174_170 Hb_007765_100 Hb_007765_100 Hb_000025_690--Hb_007765_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.58027 9.318 16.7994 4.79613 14.8331 8.04442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.87571 9.59639 7.81392 11.65 18.7848

CAGE analysis