Hb_032986_010

Information

Type -
Description -
Location Contig32986: 12534-16385
Sequence    

Annotation

kegg
ID rcu:RCOM_0842650
description Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative (EC:2.4.2.19)
nr
ID XP_002526010.1
description Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
swissprot
ID Q9ZU32
description Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic OS=Arabidopsis thaliana GN=QPT PE=2 SV=2
trembl
ID B9SJ41
description Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative OS=Ricinus communis GN=RCOM_0842650 PE=4 SV=1
Gene Ontology
ID GO:0004514
description nicotinate-nucleotide pyrophosphorylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34647: 12540-16712 , PASA_asmbl_34648: 13258-15424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032986_010 0.0 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
2 Hb_002997_080 0.0574557164 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
3 Hb_000317_470 0.060430128 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
4 Hb_000883_020 0.0621491299 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
5 Hb_009545_080 0.0668111741 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
6 Hb_002272_130 0.0688823425 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
7 Hb_023344_120 0.0736182733 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
8 Hb_000462_060 0.0744292773 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
9 Hb_001047_220 0.0761513555 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
10 Hb_000062_370 0.0781065166 - - beta-ketoacyl-ACP reductase [Vernicia fordii]
11 Hb_002276_170 0.0784212053 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
12 Hb_001584_140 0.0788673493 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
13 Hb_004619_030 0.0795731258 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
14 Hb_123915_040 0.0799482571 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
15 Hb_001981_030 0.0802764413 - - nuclear acid binding protein, putative [Ricinus communis]
16 Hb_003163_020 0.0803240138 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
17 Hb_000331_110 0.0808377176 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
18 Hb_000915_180 0.0810269931 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
19 Hb_001141_020 0.0810860223 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
20 Hb_001205_120 0.0815811142 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]

Gene co-expression network

sample Hb_032986_010 Hb_032986_010 Hb_002997_080 Hb_002997_080 Hb_032986_010--Hb_002997_080 Hb_000317_470 Hb_000317_470 Hb_032986_010--Hb_000317_470 Hb_000883_020 Hb_000883_020 Hb_032986_010--Hb_000883_020 Hb_009545_080 Hb_009545_080 Hb_032986_010--Hb_009545_080 Hb_002272_130 Hb_002272_130 Hb_032986_010--Hb_002272_130 Hb_023344_120 Hb_023344_120 Hb_032986_010--Hb_023344_120 Hb_000230_560 Hb_000230_560 Hb_002997_080--Hb_000230_560 Hb_000260_100 Hb_000260_100 Hb_002997_080--Hb_000260_100 Hb_002997_080--Hb_000883_020 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_123915_040 Hb_123915_040 Hb_000317_470--Hb_123915_040 Hb_000522_170 Hb_000522_170 Hb_000317_470--Hb_000522_170 Hb_003163_020 Hb_003163_020 Hb_000317_470--Hb_003163_020 Hb_007416_300 Hb_007416_300 Hb_000317_470--Hb_007416_300 Hb_000317_470--Hb_002272_130 Hb_000883_020--Hb_009545_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000883_020--Hb_000230_560 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_009545_080--Hb_002997_080 Hb_009545_080--Hb_000230_560 Hb_004109_280 Hb_004109_280 Hb_009545_080--Hb_004109_280 Hb_000212_330 Hb_000212_330 Hb_009545_080--Hb_000212_330 Hb_000462_060 Hb_000462_060 Hb_002272_130--Hb_000462_060 Hb_033642_030 Hb_033642_030 Hb_002272_130--Hb_033642_030 Hb_000035_110 Hb_000035_110 Hb_002272_130--Hb_000035_110 Hb_000200_380 Hb_000200_380 Hb_002272_130--Hb_000200_380 Hb_002398_030 Hb_002398_030 Hb_002272_130--Hb_002398_030 Hb_006634_070 Hb_006634_070 Hb_023344_120--Hb_006634_070 Hb_000676_250 Hb_000676_250 Hb_023344_120--Hb_000676_250 Hb_006455_120 Hb_006455_120 Hb_023344_120--Hb_006455_120 Hb_027380_130 Hb_027380_130 Hb_023344_120--Hb_027380_130 Hb_023344_120--Hb_011995_010 Hb_005269_070 Hb_005269_070 Hb_023344_120--Hb_005269_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.9715 14.9039 27.4887 18.6835 27.7739 21.5049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3607 16.4309 21.5693 18.9717 20.8316

CAGE analysis