Hb_033642_030

Information

Type -
Description -
Location Contig33642: 42316-50174
Sequence    

Annotation

kegg
ID rcu:RCOM_1003830
description Cyclic AMP receptor, putative
nr
ID XP_012084212.1
description PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
swissprot
ID O04714
description G-protein coupled receptor 1 OS=Arabidopsis thaliana GN=GCR1 PE=1 SV=1
trembl
ID B9S014
description Cyclic AMP receptor, putative OS=Ricinus communis GN=RCOM_1003830 PE=4 SV=1
Gene Ontology
ID GO:0005774
description g-protein coupled receptor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35235: 42321-45092 , PASA_asmbl_35236: 44541-45226 , PASA_asmbl_35237: 45583-50365 , PASA_asmbl_35238: 51030-53103
cDNA
(Sanger)
(ID:Location)		 013_K21.ab1: 44168-45092 , 020_O04.ab1: 44115-45092 , 028_G16.ab1: 44170-45092 , 037_A05.ab1: 44060-45092 , 049_E05.ab1: 44279-45092

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033642_030 0.0 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
2 Hb_000789_310 0.0549721132 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
3 Hb_002272_130 0.0572379605 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
4 Hb_007416_300 0.0612583062 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
5 Hb_002947_030 0.064644516 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
6 Hb_000200_380 0.0668964728 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
7 Hb_000060_090 0.0690650068 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
8 Hb_019280_030 0.069418155 - - -
9 Hb_001047_220 0.0698968737 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
10 Hb_001195_560 0.0703668695 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
11 Hb_000029_300 0.0722200898 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
12 Hb_001135_060 0.0723780295 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
13 Hb_010381_090 0.072750703 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
14 Hb_011037_030 0.0728664193 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
15 Hb_000345_380 0.0739686977 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
16 Hb_007576_110 0.0763899091 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
17 Hb_032050_040 0.0766297982 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
18 Hb_001635_160 0.0770842368 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
19 Hb_008120_030 0.0771759238 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
20 Hb_014361_070 0.0774177665 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_033642_030 Hb_033642_030 Hb_000789_310 Hb_000789_310 Hb_033642_030--Hb_000789_310 Hb_002272_130 Hb_002272_130 Hb_033642_030--Hb_002272_130 Hb_007416_300 Hb_007416_300 Hb_033642_030--Hb_007416_300 Hb_002947_030 Hb_002947_030 Hb_033642_030--Hb_002947_030 Hb_000200_380 Hb_000200_380 Hb_033642_030--Hb_000200_380 Hb_000060_090 Hb_000060_090 Hb_033642_030--Hb_000060_090 Hb_007576_110 Hb_007576_110 Hb_000789_310--Hb_007576_110 Hb_000030_190 Hb_000030_190 Hb_000789_310--Hb_000030_190 Hb_000462_060 Hb_000462_060 Hb_000789_310--Hb_000462_060 Hb_000345_380 Hb_000345_380 Hb_000789_310--Hb_000345_380 Hb_001409_020 Hb_001409_020 Hb_000789_310--Hb_001409_020 Hb_002272_130--Hb_000462_060 Hb_000035_110 Hb_000035_110 Hb_002272_130--Hb_000035_110 Hb_002272_130--Hb_000200_380 Hb_002398_030 Hb_002398_030 Hb_002272_130--Hb_002398_030 Hb_032986_010 Hb_032986_010 Hb_002272_130--Hb_032986_010 Hb_010381_090 Hb_010381_090 Hb_007416_300--Hb_010381_090 Hb_001051_080 Hb_001051_080 Hb_007416_300--Hb_001051_080 Hb_002872_030 Hb_002872_030 Hb_007416_300--Hb_002872_030 Hb_003549_150 Hb_003549_150 Hb_007416_300--Hb_003549_150 Hb_008453_140 Hb_008453_140 Hb_007416_300--Hb_008453_140 Hb_007672_060 Hb_007672_060 Hb_002947_030--Hb_007672_060 Hb_007919_100 Hb_007919_100 Hb_002947_030--Hb_007919_100 Hb_019280_030 Hb_019280_030 Hb_002947_030--Hb_019280_030 Hb_007943_110 Hb_007943_110 Hb_002947_030--Hb_007943_110 Hb_007657_010 Hb_007657_010 Hb_002947_030--Hb_007657_010 Hb_000343_250 Hb_000343_250 Hb_000200_380--Hb_000343_250 Hb_004097_070 Hb_004097_070 Hb_000200_380--Hb_004097_070 Hb_002732_040 Hb_002732_040 Hb_000200_380--Hb_002732_040 Hb_000200_380--Hb_019280_030 Hb_013399_100 Hb_013399_100 Hb_000060_090--Hb_013399_100 Hb_000060_090--Hb_001409_020 Hb_000029_300 Hb_000029_300 Hb_000060_090--Hb_000029_300 Hb_105105_020 Hb_105105_020 Hb_000060_090--Hb_105105_020 Hb_008643_210 Hb_008643_210 Hb_000060_090--Hb_008643_210 Hb_010222_050 Hb_010222_050 Hb_000060_090--Hb_010222_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9284 12.5926 15.2975 18.3372 19.7163 21.898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0241 12.6393 13.9689 10.4283 12.9247

CAGE analysis