Hb_000836_430

Information

Type -
Description -
Location Contig836: 383467-383922
Sequence    

Annotation

kegg
ID rcu:RCOM_1616670
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012083305.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9LKU8
description Pentatricopeptide repeat-containing protein At5g28460 OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
trembl
ID B9RDY2
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1616670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_430 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
2 Hb_000661_140 0.1057140985 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
3 Hb_002026_140 0.1070146744 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
4 Hb_003621_020 0.114640481 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
5 Hb_004128_200 0.1154973707 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
6 Hb_000958_130 0.117149118 - - PREDICTED: uncharacterized protein LOC105628716 isoform X1 [Jatropha curcas]
7 Hb_001898_240 0.1182271464 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
8 Hb_027073_030 0.1187173012 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
9 Hb_039605_010 0.1209197225 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
10 Hb_092337_020 0.1223033908 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
11 Hb_002928_010 0.1234319159 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
12 Hb_003994_140 0.1240971995 - - conserved hypothetical protein [Ricinus communis]
13 Hb_020367_050 0.1251502177 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
14 Hb_000563_330 0.1286209063 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_001195_040 0.1286941942 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
16 Hb_002639_150 0.1292175141 - - -
17 Hb_003142_070 0.1306751294 - - hypothetical protein F383_14657 [Gossypium arboreum]
18 Hb_003579_050 0.1308515086 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
19 Hb_001195_260 0.1310164611 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
20 Hb_011249_030 0.1316591629 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_430 Hb_000836_430 Hb_000661_140 Hb_000661_140 Hb_000836_430--Hb_000661_140 Hb_002026_140 Hb_002026_140 Hb_000836_430--Hb_002026_140 Hb_003621_020 Hb_003621_020 Hb_000836_430--Hb_003621_020 Hb_004128_200 Hb_004128_200 Hb_000836_430--Hb_004128_200 Hb_000958_130 Hb_000958_130 Hb_000836_430--Hb_000958_130 Hb_001898_240 Hb_001898_240 Hb_000836_430--Hb_001898_240 Hb_002639_150 Hb_002639_150 Hb_000661_140--Hb_002639_150 Hb_000926_310 Hb_000926_310 Hb_000661_140--Hb_000926_310 Hb_011013_010 Hb_011013_010 Hb_000661_140--Hb_011013_010 Hb_004785_190 Hb_004785_190 Hb_000661_140--Hb_004785_190 Hb_005288_150 Hb_005288_150 Hb_000661_140--Hb_005288_150 Hb_020367_050 Hb_020367_050 Hb_000661_140--Hb_020367_050 Hb_000359_330 Hb_000359_330 Hb_002026_140--Hb_000359_330 Hb_002026_140--Hb_002639_150 Hb_002292_010 Hb_002292_010 Hb_002026_140--Hb_002292_010 Hb_002157_260 Hb_002157_260 Hb_002026_140--Hb_002157_260 Hb_000261_250 Hb_000261_250 Hb_002026_140--Hb_000261_250 Hb_003142_070 Hb_003142_070 Hb_002026_140--Hb_003142_070 Hb_153553_030 Hb_153553_030 Hb_003621_020--Hb_153553_030 Hb_000009_530 Hb_000009_530 Hb_003621_020--Hb_000009_530 Hb_003621_020--Hb_001898_240 Hb_000638_290 Hb_000638_290 Hb_003621_020--Hb_000638_290 Hb_012016_010 Hb_012016_010 Hb_003621_020--Hb_012016_010 Hb_180424_010 Hb_180424_010 Hb_003621_020--Hb_180424_010 Hb_003579_050 Hb_003579_050 Hb_004128_200--Hb_003579_050 Hb_011249_030 Hb_011249_030 Hb_004128_200--Hb_011249_030 Hb_027073_030 Hb_027073_030 Hb_004128_200--Hb_027073_030 Hb_001005_020 Hb_001005_020 Hb_004128_200--Hb_001005_020 Hb_001277_280 Hb_001277_280 Hb_004128_200--Hb_001277_280 Hb_039605_010 Hb_039605_010 Hb_004128_200--Hb_039605_010 Hb_001956_040 Hb_001956_040 Hb_000958_130--Hb_001956_040 Hb_003029_070 Hb_003029_070 Hb_000958_130--Hb_003029_070 Hb_007101_160 Hb_007101_160 Hb_000958_130--Hb_007101_160 Hb_000390_310 Hb_000390_310 Hb_000958_130--Hb_000390_310 Hb_000753_240 Hb_000753_240 Hb_000958_130--Hb_000753_240 Hb_006261_090 Hb_006261_090 Hb_001898_240--Hb_006261_090 Hb_001864_070 Hb_001864_070 Hb_001898_240--Hb_001864_070 Hb_001898_240--Hb_000009_530 Hb_002228_110 Hb_002228_110 Hb_001898_240--Hb_002228_110 Hb_000610_010 Hb_000610_010 Hb_001898_240--Hb_000610_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82943 1.53752 3.29902 0.717312 2.57424 1.67395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.941019 1.72471 1.22664 0.362059 0.675624

CAGE analysis