Hb_002026_140

Information

Type -
Description -
Location Contig2026: 122091-124076
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13340g
description hypothetical protein
nr
ID XP_006381490.1
description hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
swissprot
ID Q8RV04
description Mitochondrial import inner membrane translocase subunit TIM14-1 OS=Arabidopsis thaliana GN=TIM14-1 PE=1 SV=1
trembl
ID B9MT90
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s13340g PE=4 SV=1
Gene Ontology
ID GO:0005737
description mitochondrial import inner membrane translocase subunit tim14-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20641: 122397-124619 , PASA_asmbl_20643: 122258-124583
cDNA
(Sanger)
(ID:Location)		 016_G06.ab1: 122484-124619 , 028_L05.ab1: 122546-124619 , 033_C08.ab1: 122519-124619 , 042_A20.ab1: 122442-124619

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_140 0.0 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
2 Hb_000359_330 0.0879769364 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002639_150 0.08987353 - - -
4 Hb_002292_010 0.0899742529 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
5 Hb_002157_260 0.0931858414 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
6 Hb_000261_250 0.0976389964 - - elongation factor 1-alpha [Lepidium sativum]
7 Hb_003142_070 0.0976507544 - - hypothetical protein F383_14657 [Gossypium arboreum]
8 Hb_009252_100 0.0981179872 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
9 Hb_058972_010 0.0982755232 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
10 Hb_002928_010 0.0986047187 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
11 Hb_020367_050 0.0992451134 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
12 Hb_000808_250 0.1014900907 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
13 Hb_000140_330 0.1020368199 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
14 Hb_000959_270 0.1028540298 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
15 Hb_032208_040 0.1033131889 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
16 Hb_001195_260 0.1033618712 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
17 Hb_000926_310 0.1039517392 - - uncharacterized protein LOC100500241 [Glycine max]
18 Hb_000563_330 0.1041364315 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_006623_020 0.1042658627 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
20 Hb_106552_050 0.1046154418 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]

Gene co-expression network

sample Hb_002026_140 Hb_002026_140 Hb_000359_330 Hb_000359_330 Hb_002026_140--Hb_000359_330 Hb_002639_150 Hb_002639_150 Hb_002026_140--Hb_002639_150 Hb_002292_010 Hb_002292_010 Hb_002026_140--Hb_002292_010 Hb_002157_260 Hb_002157_260 Hb_002026_140--Hb_002157_260 Hb_000261_250 Hb_000261_250 Hb_002026_140--Hb_000261_250 Hb_003142_070 Hb_003142_070 Hb_002026_140--Hb_003142_070 Hb_011848_010 Hb_011848_010 Hb_000359_330--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_000359_330--Hb_003091_010 Hb_000808_250 Hb_000808_250 Hb_000359_330--Hb_000808_250 Hb_000394_190 Hb_000394_190 Hb_000359_330--Hb_000394_190 Hb_006623_020 Hb_006623_020 Hb_000359_330--Hb_006623_020 Hb_004450_060 Hb_004450_060 Hb_000359_330--Hb_004450_060 Hb_000661_140 Hb_000661_140 Hb_002639_150--Hb_000661_140 Hb_000926_310 Hb_000926_310 Hb_002639_150--Hb_000926_310 Hb_005288_150 Hb_005288_150 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_007007_050 Hb_007007_050 Hb_002292_010--Hb_007007_050 Hb_004363_010 Hb_004363_010 Hb_002292_010--Hb_004363_010 Hb_141532_010 Hb_141532_010 Hb_002292_010--Hb_141532_010 Hb_001135_020 Hb_001135_020 Hb_002292_010--Hb_001135_020 Hb_002292_010--Hb_002639_150 Hb_002292_010--Hb_003687_230 Hb_005965_030 Hb_005965_030 Hb_002157_260--Hb_005965_030 Hb_002045_150 Hb_002045_150 Hb_002157_260--Hb_002045_150 Hb_000160_350 Hb_000160_350 Hb_002157_260--Hb_000160_350 Hb_006452_160 Hb_006452_160 Hb_002157_260--Hb_006452_160 Hb_006960_050 Hb_006960_050 Hb_002157_260--Hb_006960_050 Hb_001408_100 Hb_001408_100 Hb_002157_260--Hb_001408_100 Hb_000261_250--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_000261_250--Hb_002192_080 Hb_001142_050 Hb_001142_050 Hb_000261_250--Hb_001142_050 Hb_000261_250--Hb_000359_330 Hb_003849_060 Hb_003849_060 Hb_000261_250--Hb_003849_060 Hb_106552_050 Hb_106552_050 Hb_000261_250--Hb_106552_050 Hb_003142_070--Hb_000359_330 Hb_003142_070--Hb_006623_020 Hb_003142_070--Hb_003091_010 Hb_003142_070--Hb_000808_250 Hb_001352_090 Hb_001352_090 Hb_003142_070--Hb_001352_090 Hb_000920_280 Hb_000920_280 Hb_003142_070--Hb_000920_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2315 18.1905 26.0589 11.0934 30.715 17.5774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7577 18.3877 10.0905 6.48199 4.82979

CAGE analysis