Hb_007101_160

Information

Type -
Description -
Location Contig7101: 96928-99251
Sequence    

Annotation

kegg
ID rcu:RCOM_2150310
description hypothetical protein
nr
ID XP_002534527.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T8F8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2150310 PE=4 SV=1
Gene Ontology
ID GO:0042646
description serine threonine-protein kinase ynr047w

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55256: 98692-99214 , PASA_asmbl_55257: 100074-100943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000424_020 0.1193832601 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
3 Hb_000390_310 0.1205589769 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
4 Hb_000958_130 0.1215523501 - - PREDICTED: uncharacterized protein LOC105628716 isoform X1 [Jatropha curcas]
5 Hb_000436_100 0.1293314702 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
6 Hb_001956_040 0.1333219449 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_007313_090 0.1340768568 - - conserved hypothetical protein [Ricinus communis]
8 Hb_029142_030 0.1386732028 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
9 Hb_005975_010 0.1428405675 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
10 Hb_004128_200 0.1444165728 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
11 Hb_000003_300 0.1448189208 - - PREDICTED: uncharacterized protein LOC105631182 [Jatropha curcas]
12 Hb_001377_030 0.1451170371 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
13 Hb_001369_610 0.148151715 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
14 Hb_003581_210 0.1485020779 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
15 Hb_002876_350 0.1504390902 - - PREDICTED: gibberellin-regulated protein 9-like isoform X2 [Citrus sinensis]
16 Hb_001232_150 0.1517645029 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
17 Hb_000445_070 0.1561381587 - - PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
18 Hb_000051_060 0.157592837 - - conserved hypothetical protein [Ricinus communis]
19 Hb_158092_030 0.1588468069 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Jatropha curcas]
20 Hb_003579_050 0.1604970805 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_007101_160 Hb_007101_160 Hb_000424_020 Hb_000424_020 Hb_007101_160--Hb_000424_020 Hb_000390_310 Hb_000390_310 Hb_007101_160--Hb_000390_310 Hb_000958_130 Hb_000958_130 Hb_007101_160--Hb_000958_130 Hb_000436_100 Hb_000436_100 Hb_007101_160--Hb_000436_100 Hb_001956_040 Hb_001956_040 Hb_007101_160--Hb_001956_040 Hb_007313_090 Hb_007313_090 Hb_007101_160--Hb_007313_090 Hb_000424_020--Hb_000436_100 Hb_029142_030 Hb_029142_030 Hb_000424_020--Hb_029142_030 Hb_002255_040 Hb_002255_040 Hb_000424_020--Hb_002255_040 Hb_011249_030 Hb_011249_030 Hb_000424_020--Hb_011249_030 Hb_001930_030 Hb_001930_030 Hb_000424_020--Hb_001930_030 Hb_000003_300 Hb_000003_300 Hb_000424_020--Hb_000003_300 Hb_000948_180 Hb_000948_180 Hb_000390_310--Hb_000948_180 Hb_032202_230 Hb_032202_230 Hb_000390_310--Hb_032202_230 Hb_004951_070 Hb_004951_070 Hb_000390_310--Hb_004951_070 Hb_000175_590 Hb_000175_590 Hb_000390_310--Hb_000175_590 Hb_001652_080 Hb_001652_080 Hb_000390_310--Hb_001652_080 Hb_001213_130 Hb_001213_130 Hb_000390_310--Hb_001213_130 Hb_000958_130--Hb_001956_040 Hb_000836_430 Hb_000836_430 Hb_000958_130--Hb_000836_430 Hb_003029_070 Hb_003029_070 Hb_000958_130--Hb_003029_070 Hb_000958_130--Hb_000390_310 Hb_000753_240 Hb_000753_240 Hb_000958_130--Hb_000753_240 Hb_000077_010 Hb_000077_010 Hb_000436_100--Hb_000077_010 Hb_000436_100--Hb_029142_030 Hb_000436_100--Hb_001930_030 Hb_000436_100--Hb_000003_300 Hb_000436_100--Hb_002255_040 Hb_001956_040--Hb_003029_070 Hb_005975_010 Hb_005975_010 Hb_001956_040--Hb_005975_010 Hb_003579_050 Hb_003579_050 Hb_001956_040--Hb_003579_050 Hb_002284_150 Hb_002284_150 Hb_001956_040--Hb_002284_150 Hb_000300_180 Hb_000300_180 Hb_001956_040--Hb_000300_180 Hb_000926_180 Hb_000926_180 Hb_007313_090--Hb_000926_180 Hb_000576_050 Hb_000576_050 Hb_007313_090--Hb_000576_050 Hb_000836_170 Hb_000836_170 Hb_007313_090--Hb_000836_170 Hb_004785_190 Hb_004785_190 Hb_007313_090--Hb_004785_190 Hb_058972_010 Hb_058972_010 Hb_007313_090--Hb_058972_010 Hb_027043_020 Hb_027043_020 Hb_007313_090--Hb_027043_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3846 7.06335 34.1597 3.03473 13.0227 14.6257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.52653 16.6482 5.06422 3.33933 12.186

CAGE analysis