Hb_027043_020

Information

Type -
Description -
Location Contig27043: 34155-39085
Sequence    

Annotation

kegg
ID rcu:RCOM_1329390
description hypothetical protein
nr
ID XP_002521748.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S6X9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1329390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28377: 34291-38922 , PASA_asmbl_28378: 36970-37252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027043_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002918_030 0.0789388057 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
3 Hb_002639_150 0.0803850364 - - -
4 Hb_002495_040 0.0818970571 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
5 Hb_003683_050 0.084345934 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
6 Hb_000260_100 0.085673734 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001936_080 0.086818599 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
8 Hb_000670_020 0.0876796947 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
9 Hb_001329_130 0.0880232245 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011970_030 0.0892335701 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
11 Hb_000926_180 0.0893125929 - - proline synthetase associated protein, putative [Ricinus communis]
12 Hb_003687_230 0.0897498776 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
13 Hb_003292_040 0.0910206015 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
14 Hb_010315_060 0.0914716375 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
15 Hb_000174_110 0.09274388 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
16 Hb_000230_560 0.0930734357 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
17 Hb_005288_150 0.0932361483 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
18 Hb_003030_070 0.0934458206 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
19 Hb_000392_230 0.0936979359 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001983_030 0.0959290397 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_027043_020 Hb_027043_020 Hb_002918_030 Hb_002918_030 Hb_027043_020--Hb_002918_030 Hb_002639_150 Hb_002639_150 Hb_027043_020--Hb_002639_150 Hb_002495_040 Hb_002495_040 Hb_027043_020--Hb_002495_040 Hb_003683_050 Hb_003683_050 Hb_027043_020--Hb_003683_050 Hb_000260_100 Hb_000260_100 Hb_027043_020--Hb_000260_100 Hb_001936_080 Hb_001936_080 Hb_027043_020--Hb_001936_080 Hb_003125_160 Hb_003125_160 Hb_002918_030--Hb_003125_160 Hb_006120_070 Hb_006120_070 Hb_002918_030--Hb_006120_070 Hb_000174_110 Hb_000174_110 Hb_002918_030--Hb_000174_110 Hb_002918_030--Hb_000260_100 Hb_006620_020 Hb_006620_020 Hb_002918_030--Hb_006620_020 Hb_000230_560 Hb_000230_560 Hb_002918_030--Hb_000230_560 Hb_000661_140 Hb_000661_140 Hb_002639_150--Hb_000661_140 Hb_000926_310 Hb_000926_310 Hb_002639_150--Hb_000926_310 Hb_005288_150 Hb_005288_150 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_000465_430 Hb_000465_430 Hb_002495_040--Hb_000465_430 Hb_003030_070 Hb_003030_070 Hb_002495_040--Hb_003030_070 Hb_001369_180 Hb_001369_180 Hb_002495_040--Hb_001369_180 Hb_012092_010 Hb_012092_010 Hb_002495_040--Hb_012092_010 Hb_000092_100 Hb_000092_100 Hb_002495_040--Hb_000092_100 Hb_002495_040--Hb_001936_080 Hb_001481_170 Hb_001481_170 Hb_003683_050--Hb_001481_170 Hb_001195_760 Hb_001195_760 Hb_003683_050--Hb_001195_760 Hb_003683_050--Hb_001936_080 Hb_011970_030 Hb_011970_030 Hb_003683_050--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003683_050--Hb_000670_020 Hb_000085_180 Hb_000085_180 Hb_003683_050--Hb_000085_180 Hb_000260_100--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000260_100--Hb_002997_080 Hb_000236_240 Hb_000236_240 Hb_000260_100--Hb_000236_240 Hb_001329_130 Hb_001329_130 Hb_000260_100--Hb_001329_130 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060 Hb_003001_120 Hb_003001_120 Hb_001936_080--Hb_003001_120 Hb_028227_020 Hb_028227_020 Hb_001936_080--Hb_028227_020 Hb_009557_070 Hb_009557_070 Hb_001936_080--Hb_009557_070 Hb_001936_080--Hb_000465_430 Hb_001936_080--Hb_012092_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.517 7.12625 19.0095 13.0145 20.2748 21.1105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0658 19.3231 8.40526 6.62233 7.58306

CAGE analysis