Hb_000638_290

Information

Type -
Description -
Location Contig638: 233982-242311
Sequence    

Annotation

kegg
ID rcu:RCOM_0627060
description DNA cross-link repair protein pso2/snm1, putative
nr
ID XP_012066578.1
description PREDICTED: 5' exonuclease Apollo [Jatropha curcas]
swissprot
ID Q5QJC3
description 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1
trembl
ID A0A067L2C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24366 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52051: 234081-234363 , PASA_asmbl_52052: 237098-237462 , PASA_asmbl_52053: 237599-237880 , PASA_asmbl_52055: 241583-241757 , PASA_asmbl_52056: 241790-241912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_290 0.0 - - PREDICTED: 5' exonuclease Apollo [Jatropha curcas]
2 Hb_153553_030 0.0797320345 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
3 Hb_004093_090 0.0798017858 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
4 Hb_012016_010 0.0852886032 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
5 Hb_000866_410 0.0893465249 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
6 Hb_029142_060 0.0893714267 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
7 Hb_003621_020 0.0894609439 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
8 Hb_000959_210 0.0905523782 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
9 Hb_003935_020 0.0923525553 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002740_030 0.0942146027 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
11 Hb_000009_530 0.0988644703 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
12 Hb_005588_030 0.0999484482 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
13 Hb_180424_010 0.1001639598 - - Charged multivesicular body protein, putative [Ricinus communis]
14 Hb_138585_090 0.1008260013 - - Long chain base2 isoform 2 [Theobroma cacao]
15 Hb_120410_010 0.1015931783 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
16 Hb_002600_020 0.1023570068 - - unnamed protein product [Vitis vinifera]
17 Hb_000362_200 0.1046298672 - - exonuclease family protein [Populus trichocarpa]
18 Hb_003064_020 0.1049525165 - - hypothetical protein JCGZ_21649 [Jatropha curcas]
19 Hb_001163_050 0.1054644133 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
20 Hb_000610_010 0.1068582727 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_000638_290 Hb_000638_290 Hb_153553_030 Hb_153553_030 Hb_000638_290--Hb_153553_030 Hb_004093_090 Hb_004093_090 Hb_000638_290--Hb_004093_090 Hb_012016_010 Hb_012016_010 Hb_000638_290--Hb_012016_010 Hb_000866_410 Hb_000866_410 Hb_000638_290--Hb_000866_410 Hb_029142_060 Hb_029142_060 Hb_000638_290--Hb_029142_060 Hb_003621_020 Hb_003621_020 Hb_000638_290--Hb_003621_020 Hb_153553_030--Hb_003621_020 Hb_002600_020 Hb_002600_020 Hb_153553_030--Hb_002600_020 Hb_005588_030 Hb_005588_030 Hb_153553_030--Hb_005588_030 Hb_153553_030--Hb_000866_410 Hb_000009_530 Hb_000009_530 Hb_153553_030--Hb_000009_530 Hb_000610_010 Hb_000610_010 Hb_004093_090--Hb_000610_010 Hb_004093_090--Hb_005588_030 Hb_120410_010 Hb_120410_010 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_004093_090--Hb_000009_530 Hb_001998_120 Hb_001998_120 Hb_012016_010--Hb_001998_120 Hb_012016_010--Hb_000009_530 Hb_012016_010--Hb_003621_020 Hb_012016_010--Hb_004093_090 Hb_000444_080 Hb_000444_080 Hb_012016_010--Hb_000444_080 Hb_012384_030 Hb_012384_030 Hb_000866_410--Hb_012384_030 Hb_002217_110 Hb_002217_110 Hb_000866_410--Hb_002217_110 Hb_008453_140 Hb_008453_140 Hb_000866_410--Hb_008453_140 Hb_000866_410--Hb_120410_010 Hb_000866_410--Hb_029142_060 Hb_000866_410--Hb_004093_090 Hb_000453_050 Hb_000453_050 Hb_029142_060--Hb_000453_050 Hb_000866_010 Hb_000866_010 Hb_029142_060--Hb_000866_010 Hb_029142_060--Hb_004093_090 Hb_000260_100 Hb_000260_100 Hb_029142_060--Hb_000260_100 Hb_003994_200 Hb_003994_200 Hb_029142_060--Hb_003994_200 Hb_003621_020--Hb_000009_530 Hb_001898_240 Hb_001898_240 Hb_003621_020--Hb_001898_240 Hb_180424_010 Hb_180424_010 Hb_003621_020--Hb_180424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.57785 2.81585 3.9411 2.11446 3.46026 2.78043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77057 6.26825 2.89626 1.4796 2.23661

CAGE analysis