Hb_000453_050

Information

Type -
Description -
Location Contig453: 34023-37709
Sequence    

Annotation

kegg
ID rcu:RCOM_1165760
description DNA binding protein, putative
nr
ID XP_012075955.1
description PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
swissprot
ID Q9SNC0
description Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=MBD5 PE=1 SV=1
trembl
ID A0A067KHJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11043 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43251: 34168-37527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_050 0.0 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
2 Hb_029142_060 0.0646479443 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
3 Hb_027295_050 0.0719572489 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
4 Hb_000917_060 0.0807277416 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
5 Hb_000205_190 0.0813072391 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
6 Hb_000866_010 0.0821874228 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000866_410 0.0835957967 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
8 Hb_000804_040 0.0888288251 - - protein with unknown function [Ricinus communis]
9 Hb_000010_400 0.0911383835 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
10 Hb_009421_020 0.0912607354 - - PREDICTED: caltractin-like [Jatropha curcas]
11 Hb_003994_200 0.0927282093 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
12 Hb_008165_060 0.0955544451 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
13 Hb_002013_020 0.0968684123 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
14 Hb_001926_030 0.0969415673 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
15 Hb_007007_060 0.0981089637 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
16 Hb_017358_030 0.0987621226 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
17 Hb_000201_100 0.0991834903 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
18 Hb_000753_240 0.0999168203 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
19 Hb_000866_260 0.1004208301 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
20 Hb_000260_100 0.1006439982 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000453_050 Hb_000453_050 Hb_029142_060 Hb_029142_060 Hb_000453_050--Hb_029142_060 Hb_027295_050 Hb_027295_050 Hb_000453_050--Hb_027295_050 Hb_000917_060 Hb_000917_060 Hb_000453_050--Hb_000917_060 Hb_000205_190 Hb_000205_190 Hb_000453_050--Hb_000205_190 Hb_000866_010 Hb_000866_010 Hb_000453_050--Hb_000866_010 Hb_000866_410 Hb_000866_410 Hb_000453_050--Hb_000866_410 Hb_029142_060--Hb_000866_410 Hb_029142_060--Hb_000866_010 Hb_004093_090 Hb_004093_090 Hb_029142_060--Hb_004093_090 Hb_000260_100 Hb_000260_100 Hb_029142_060--Hb_000260_100 Hb_003994_200 Hb_003994_200 Hb_029142_060--Hb_003994_200 Hb_000201_100 Hb_000201_100 Hb_027295_050--Hb_000201_100 Hb_008554_030 Hb_008554_030 Hb_027295_050--Hb_008554_030 Hb_017358_030 Hb_017358_030 Hb_027295_050--Hb_017358_030 Hb_013607_030 Hb_013607_030 Hb_027295_050--Hb_013607_030 Hb_000165_250 Hb_000165_250 Hb_027295_050--Hb_000165_250 Hb_000866_260 Hb_000866_260 Hb_000917_060--Hb_000866_260 Hb_000329_320 Hb_000329_320 Hb_000917_060--Hb_000329_320 Hb_000917_060--Hb_017358_030 Hb_032202_140 Hb_032202_140 Hb_000917_060--Hb_032202_140 Hb_001163_050 Hb_001163_050 Hb_000917_060--Hb_001163_050 Hb_002013_020 Hb_002013_020 Hb_000917_060--Hb_002013_020 Hb_001158_070 Hb_001158_070 Hb_000205_190--Hb_001158_070 Hb_004970_190 Hb_004970_190 Hb_000205_190--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_000205_190--Hb_000804_040 Hb_008165_060 Hb_008165_060 Hb_000205_190--Hb_008165_060 Hb_001001_080 Hb_001001_080 Hb_000205_190--Hb_001001_080 Hb_007007_120 Hb_007007_120 Hb_000205_190--Hb_007007_120 Hb_006817_010 Hb_006817_010 Hb_000866_010--Hb_006817_010 Hb_000053_110 Hb_000053_110 Hb_000866_010--Hb_000053_110 Hb_009421_020 Hb_009421_020 Hb_000866_010--Hb_009421_020 Hb_007389_010 Hb_007389_010 Hb_000866_010--Hb_007389_010 Hb_000866_010--Hb_000260_100 Hb_002235_250 Hb_002235_250 Hb_000866_010--Hb_002235_250 Hb_012384_030 Hb_012384_030 Hb_000866_410--Hb_012384_030 Hb_002217_110 Hb_002217_110 Hb_000866_410--Hb_002217_110 Hb_008453_140 Hb_008453_140 Hb_000866_410--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_000866_410--Hb_120410_010 Hb_000866_410--Hb_004093_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.65565 2.85908 4.89307 1.70208 4.34623 4.54852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51853 4.22128 4.81372 1.77106 3.14264

CAGE analysis