Hb_029142_060

Information

Type -
Description -
Location Contig29142: 49034-53440
Sequence    

Annotation

kegg
ID pop:POPTR_0002s01830g
description POPTRDRAFT_642899; pseudouridine synthase family protein
nr
ID XP_012078835.1
description PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q3ECD0
description RNA pseudouridine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=At1g76050 PE=2 SV=1
trembl
ID B9GQ77
description Pseudouridine synthase OS=Populus trichocarpa GN=POPTR_0002s01830g PE=3 SV=1
Gene Ontology
ID GO:0003723
description rna pseudouridine synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30561: 48565-54173 , PASA_asmbl_30562: 48774-49432 , PASA_asmbl_30563: 49166-52168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029142_060 0.0 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
2 Hb_000453_050 0.0646479443 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
3 Hb_000866_410 0.0724224087 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
4 Hb_000866_010 0.0753764119 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004093_090 0.07674435 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
6 Hb_000260_100 0.0854492902 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003994_200 0.0880186808 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
8 Hb_000638_290 0.0893714267 - - PREDICTED: 5' exonuclease Apollo [Jatropha curcas]
9 Hb_120410_010 0.0904292131 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
10 Hb_000768_170 0.0919132822 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
11 Hb_000236_240 0.0924628234 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
12 Hb_000753_240 0.0933564308 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
13 Hb_005588_030 0.0938688377 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
14 Hb_002013_020 0.0941308183 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
15 Hb_009421_020 0.0947629298 - - PREDICTED: caltractin-like [Jatropha curcas]
16 Hb_007389_010 0.0951278705 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
17 Hb_012022_160 0.0954541555 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
18 Hb_002740_030 0.0954927809 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
19 Hb_004841_010 0.0979400328 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
20 Hb_027295_050 0.0981144866 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_029142_060 Hb_029142_060 Hb_000453_050 Hb_000453_050 Hb_029142_060--Hb_000453_050 Hb_000866_410 Hb_000866_410 Hb_029142_060--Hb_000866_410 Hb_000866_010 Hb_000866_010 Hb_029142_060--Hb_000866_010 Hb_004093_090 Hb_004093_090 Hb_029142_060--Hb_004093_090 Hb_000260_100 Hb_000260_100 Hb_029142_060--Hb_000260_100 Hb_003994_200 Hb_003994_200 Hb_029142_060--Hb_003994_200 Hb_027295_050 Hb_027295_050 Hb_000453_050--Hb_027295_050 Hb_000917_060 Hb_000917_060 Hb_000453_050--Hb_000917_060 Hb_000205_190 Hb_000205_190 Hb_000453_050--Hb_000205_190 Hb_000453_050--Hb_000866_010 Hb_000453_050--Hb_000866_410 Hb_012384_030 Hb_012384_030 Hb_000866_410--Hb_012384_030 Hb_002217_110 Hb_002217_110 Hb_000866_410--Hb_002217_110 Hb_008453_140 Hb_008453_140 Hb_000866_410--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_000866_410--Hb_120410_010 Hb_000866_410--Hb_004093_090 Hb_006817_010 Hb_006817_010 Hb_000866_010--Hb_006817_010 Hb_000053_110 Hb_000053_110 Hb_000866_010--Hb_000053_110 Hb_009421_020 Hb_009421_020 Hb_000866_010--Hb_009421_020 Hb_007389_010 Hb_007389_010 Hb_000866_010--Hb_007389_010 Hb_000866_010--Hb_000260_100 Hb_002235_250 Hb_002235_250 Hb_000866_010--Hb_002235_250 Hb_000610_010 Hb_000610_010 Hb_004093_090--Hb_000610_010 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_000009_530 Hb_000009_530 Hb_004093_090--Hb_000009_530 Hb_005288_150 Hb_005288_150 Hb_000260_100--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000260_100--Hb_002997_080 Hb_000236_240 Hb_000236_240 Hb_000260_100--Hb_000236_240 Hb_001329_130 Hb_001329_130 Hb_000260_100--Hb_001329_130 Hb_000230_560 Hb_000230_560 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060 Hb_003994_200--Hb_007007_060 Hb_021422_010 Hb_021422_010 Hb_003994_200--Hb_021422_010 Hb_000032_490 Hb_000032_490 Hb_003994_200--Hb_000032_490 Hb_003018_060 Hb_003018_060 Hb_003994_200--Hb_003018_060 Hb_001357_090 Hb_001357_090 Hb_003994_200--Hb_001357_090 Hb_000368_020 Hb_000368_020 Hb_003994_200--Hb_000368_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.41787 2.94007 5.40294 2.84496 5.44584 5.16833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.68888 5.92276 4.32377 1.60143 3.52126

CAGE analysis