Hb_000201_100

Information

Type -
Description -
Location Contig201: 135906-138280
Sequence    

Annotation

kegg
ID rcu:RCOM_0697780
description AMP-activated protein kinase, gamma regulatory subunit, putative
nr
ID XP_012091929.1
description PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
swissprot
ID Q9CAR3
description SNF1-related protein kinase regulatory subunit gamma-1-like OS=Arabidopsis thaliana GN=CBSCBS2 PE=1 SV=1
trembl
ID A0A067JEQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21689 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20422: 136244-136688 , PASA_asmbl_20423: 137861-138114 , PASA_asmbl_20424: 138126-139293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000201_100 0.0 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
2 Hb_027295_050 0.0600285842 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
3 Hb_001247_250 0.0616840793 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
4 Hb_000172_430 0.0657018043 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000165_250 0.0722422628 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
6 Hb_000029_050 0.0755652617 - - expressed protein, putative [Ricinus communis]
7 Hb_000289_060 0.0785199066 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
8 Hb_077562_050 0.0797276302 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
9 Hb_002035_120 0.0800648987 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14330 [Jatropha curcas]
10 Hb_033006_030 0.0836003532 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
11 Hb_000866_410 0.0838393931 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
12 Hb_002234_170 0.084204921 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
13 Hb_017358_030 0.0847837283 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
14 Hb_001838_060 0.0866814663 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
15 Hb_007416_180 0.0869672185 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
16 Hb_000291_050 0.0876055227 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
17 Hb_005779_080 0.0879835299 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
18 Hb_036790_100 0.0880451998 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
19 Hb_001818_070 0.0882124799 - - carbon catabolite repressor protein, putative [Ricinus communis]
20 Hb_011316_050 0.0887109599 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]

Gene co-expression network

sample Hb_000201_100 Hb_000201_100 Hb_027295_050 Hb_027295_050 Hb_000201_100--Hb_027295_050 Hb_001247_250 Hb_001247_250 Hb_000201_100--Hb_001247_250 Hb_000172_430 Hb_000172_430 Hb_000201_100--Hb_000172_430 Hb_000165_250 Hb_000165_250 Hb_000201_100--Hb_000165_250 Hb_000029_050 Hb_000029_050 Hb_000201_100--Hb_000029_050 Hb_000289_060 Hb_000289_060 Hb_000201_100--Hb_000289_060 Hb_008554_030 Hb_008554_030 Hb_027295_050--Hb_008554_030 Hb_017358_030 Hb_017358_030 Hb_027295_050--Hb_017358_030 Hb_000453_050 Hb_000453_050 Hb_027295_050--Hb_000453_050 Hb_013607_030 Hb_013607_030 Hb_027295_050--Hb_013607_030 Hb_027295_050--Hb_000165_250 Hb_033006_030 Hb_033006_030 Hb_001247_250--Hb_033006_030 Hb_001247_250--Hb_000172_430 Hb_004208_030 Hb_004208_030 Hb_001247_250--Hb_004208_030 Hb_002234_170 Hb_002234_170 Hb_001247_250--Hb_002234_170 Hb_002073_200 Hb_002073_200 Hb_001247_250--Hb_002073_200 Hb_009911_030 Hb_009911_030 Hb_000172_430--Hb_009911_030 Hb_162275_050 Hb_162275_050 Hb_000172_430--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_000172_430--Hb_012779_090 Hb_012194_030 Hb_012194_030 Hb_000172_430--Hb_012194_030 Hb_001838_060 Hb_001838_060 Hb_000172_430--Hb_001838_060 Hb_000165_250--Hb_000029_050 Hb_004221_020 Hb_004221_020 Hb_000165_250--Hb_004221_020 Hb_006649_050 Hb_006649_050 Hb_000165_250--Hb_006649_050 Hb_000165_250--Hb_017358_030 Hb_005496_130 Hb_005496_130 Hb_000165_250--Hb_005496_130 Hb_000291_050 Hb_000291_050 Hb_000165_250--Hb_000291_050 Hb_000029_050--Hb_004221_020 Hb_005993_050 Hb_005993_050 Hb_000029_050--Hb_005993_050 Hb_023386_020 Hb_023386_020 Hb_000029_050--Hb_023386_020 Hb_005779_080 Hb_005779_080 Hb_000029_050--Hb_005779_080 Hb_001409_020 Hb_001409_020 Hb_000029_050--Hb_001409_020 Hb_000289_060--Hb_004221_020 Hb_001248_060 Hb_001248_060 Hb_000289_060--Hb_001248_060 Hb_000538_270 Hb_000538_270 Hb_000289_060--Hb_000538_270 Hb_002686_030 Hb_002686_030 Hb_000289_060--Hb_002686_030 Hb_010618_010 Hb_010618_010 Hb_000289_060--Hb_010618_010 Hb_077562_050 Hb_077562_050 Hb_000289_060--Hb_077562_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.659563 0.712795 0.475392 0.309322 0.555118 0.59494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.366963 0.70561 0.656171 0.30838 0.530893

CAGE analysis