Hb_002600_020

Information

Type -
Description -
Location Contig2600: 33041-42898
Sequence    

Annotation

kegg
ID tcc:TCM_019520
description NagB/RpiA/CoA transferase-like superfamily protein isoform 1
nr
ID CBI16861.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q61749
description Translation initiation factor eIF-2B subunit delta OS=Mus musculus GN=Eif2b4 PE=2 SV=2
trembl
ID D7SMR4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00170 PE=3 SV=1
Gene Ontology
ID GO:0005634
description transferase-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27082: 37560-37757 , PASA_asmbl_27083: 39528-42820
cDNA
(Sanger)
(ID:Location)		 015_N24.ab1: 39621-42815 , 032_D02.ab1: 39621-42815 , 044_P23.ab1: 39606-42818

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_032202_140 0.0443292594 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
3 Hb_000181_110 0.072756902 - - PREDICTED: uncharacterized protein LOC105637521 [Jatropha curcas]
4 Hb_002530_030 0.0741453167 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
5 Hb_001163_050 0.0747297394 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
6 Hb_000684_380 0.0755294014 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
7 Hb_153553_030 0.0762965846 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
8 Hb_001456_060 0.0772820245 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
9 Hb_011519_010 0.0789704771 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
10 Hb_003001_080 0.0794869367 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
11 Hb_004058_030 0.0831471605 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
12 Hb_000768_090 0.0831645579 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
13 Hb_002013_020 0.0847237228 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
14 Hb_120410_010 0.0855696472 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
15 Hb_008453_140 0.085818453 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
16 Hb_002163_050 0.0873848329 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
17 Hb_000866_410 0.0875398616 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
18 Hb_011995_010 0.0883287991 - - dc50, putative [Ricinus communis]
19 Hb_000868_110 0.0892377909 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
20 Hb_000317_240 0.0897081617 - - PREDICTED: protein DYAD [Jatropha curcas]

Gene co-expression network

sample Hb_002600_020 Hb_002600_020 Hb_032202_140 Hb_032202_140 Hb_002600_020--Hb_032202_140 Hb_000181_110 Hb_000181_110 Hb_002600_020--Hb_000181_110 Hb_002530_030 Hb_002530_030 Hb_002600_020--Hb_002530_030 Hb_001163_050 Hb_001163_050 Hb_002600_020--Hb_001163_050 Hb_000684_380 Hb_000684_380 Hb_002600_020--Hb_000684_380 Hb_153553_030 Hb_153553_030 Hb_002600_020--Hb_153553_030 Hb_002013_020 Hb_002013_020 Hb_032202_140--Hb_002013_020 Hb_032202_140--Hb_001163_050 Hb_003001_080 Hb_003001_080 Hb_032202_140--Hb_003001_080 Hb_001456_060 Hb_001456_060 Hb_032202_140--Hb_001456_060 Hb_011995_010 Hb_011995_010 Hb_032202_140--Hb_011995_010 Hb_000181_110--Hb_002530_030 Hb_000959_210 Hb_000959_210 Hb_000181_110--Hb_000959_210 Hb_003125_200 Hb_003125_200 Hb_000181_110--Hb_003125_200 Hb_004931_070 Hb_004931_070 Hb_000181_110--Hb_004931_070 Hb_000317_240 Hb_000317_240 Hb_000181_110--Hb_000317_240 Hb_002530_030--Hb_000317_240 Hb_120410_010 Hb_120410_010 Hb_002530_030--Hb_120410_010 Hb_001305_010 Hb_001305_010 Hb_002530_030--Hb_001305_010 Hb_000016_250 Hb_000016_250 Hb_002530_030--Hb_000016_250 Hb_004310_150 Hb_004310_150 Hb_002530_030--Hb_004310_150 Hb_002530_030--Hb_011995_010 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_003125_120 Hb_003125_120 Hb_001163_050--Hb_003125_120 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_001142_030 Hb_001142_030 Hb_001163_050--Hb_001142_030 Hb_001163_050--Hb_003001_080 Hb_008453_140 Hb_008453_140 Hb_001163_050--Hb_008453_140 Hb_024958_010 Hb_024958_010 Hb_000684_380--Hb_024958_010 Hb_000589_120 Hb_000589_120 Hb_000684_380--Hb_000589_120 Hb_000768_090 Hb_000768_090 Hb_000684_380--Hb_000768_090 Hb_004058_030 Hb_004058_030 Hb_000684_380--Hb_004058_030 Hb_001359_050 Hb_001359_050 Hb_000684_380--Hb_001359_050 Hb_000684_380--Hb_000331_550 Hb_003621_020 Hb_003621_020 Hb_153553_030--Hb_003621_020 Hb_005588_030 Hb_005588_030 Hb_153553_030--Hb_005588_030 Hb_000866_410 Hb_000866_410 Hb_153553_030--Hb_000866_410 Hb_000638_290 Hb_000638_290 Hb_153553_030--Hb_000638_290 Hb_000009_530 Hb_000009_530 Hb_153553_030--Hb_000009_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4681 19.9275 27.4548 13.917 22.8489 19.0451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4872 30.0928 24.2028 17.0785 11.4471

CAGE analysis