Hb_012016_010

Information

Type -
Description -
Location Contig12016: 17197-19524
Sequence    

Annotation

kegg
ID pmum:103339827
description glycine-rich RNA-binding protein 6, mitochondrial
nr
ID XP_012074891.1
description PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
swissprot
ID Q9FZ84
description Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana GN=RBG6 PE=2 SV=1
trembl
ID A0A067KH82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09034 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06248: 17208-19561 , PASA_asmbl_06249: 18192-18526 , PASA_asmbl_06250: 19039-19346
cDNA
(Sanger)
(ID:Location)		 003_E21.ab1: 17343-19542 , 004_H13.ab1: 17343-19542 , 007_H21.ab1: 17209-19542 , 011_P05.ab1: 17343-19542 , 023_O10.ab1: 17252-19542

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012016_010 0.0 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
2 Hb_000638_290 0.0852886032 - - PREDICTED: 5' exonuclease Apollo [Jatropha curcas]
3 Hb_001998_120 0.0859547697 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
4 Hb_000009_530 0.0959915689 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
5 Hb_003621_020 0.0988250301 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
6 Hb_004093_090 0.1003137223 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
7 Hb_000444_080 0.1025219503 - - hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
8 Hb_004449_170 0.1057676746 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
9 Hb_005588_030 0.1107076396 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
10 Hb_029142_060 0.1121977687 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
11 Hb_180424_010 0.1141985445 - - Charged multivesicular body protein, putative [Ricinus communis]
12 Hb_000610_010 0.1151978888 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
13 Hb_153553_030 0.1164300645 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
14 Hb_008112_040 0.1164781223 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
15 Hb_000633_020 0.1179717776 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
16 Hb_001329_290 0.1185189189 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
17 Hb_004787_060 0.1205432404 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
18 Hb_004096_090 0.1205520064 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
19 Hb_004934_030 0.1209790309 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
20 Hb_000116_310 0.1214294816 - - 50S robosomal protein L11, putative [Ricinus communis]

Gene co-expression network

sample Hb_012016_010 Hb_012016_010 Hb_000638_290 Hb_000638_290 Hb_012016_010--Hb_000638_290 Hb_001998_120 Hb_001998_120 Hb_012016_010--Hb_001998_120 Hb_000009_530 Hb_000009_530 Hb_012016_010--Hb_000009_530 Hb_003621_020 Hb_003621_020 Hb_012016_010--Hb_003621_020 Hb_004093_090 Hb_004093_090 Hb_012016_010--Hb_004093_090 Hb_000444_080 Hb_000444_080 Hb_012016_010--Hb_000444_080 Hb_153553_030 Hb_153553_030 Hb_000638_290--Hb_153553_030 Hb_000638_290--Hb_004093_090 Hb_000866_410 Hb_000866_410 Hb_000638_290--Hb_000866_410 Hb_029142_060 Hb_029142_060 Hb_000638_290--Hb_029142_060 Hb_000638_290--Hb_003621_020 Hb_004934_030 Hb_004934_030 Hb_001998_120--Hb_004934_030 Hb_000633_020 Hb_000633_020 Hb_001998_120--Hb_000633_020 Hb_001998_120--Hb_000444_080 Hb_000260_800 Hb_000260_800 Hb_001998_120--Hb_000260_800 Hb_001476_070 Hb_001476_070 Hb_001998_120--Hb_001476_070 Hb_000610_010 Hb_000610_010 Hb_000009_530--Hb_000610_010 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_003687_230 Hb_003687_230 Hb_000009_530--Hb_003687_230 Hb_000009_530--Hb_004093_090 Hb_000144_100 Hb_000144_100 Hb_000009_530--Hb_000144_100 Hb_003292_040 Hb_003292_040 Hb_000009_530--Hb_003292_040 Hb_003621_020--Hb_153553_030 Hb_003621_020--Hb_000009_530 Hb_001898_240 Hb_001898_240 Hb_003621_020--Hb_001898_240 Hb_180424_010 Hb_180424_010 Hb_003621_020--Hb_180424_010 Hb_004093_090--Hb_000610_010 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_120410_010 Hb_120410_010 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_002234_140 Hb_002234_140 Hb_000444_080--Hb_002234_140 Hb_010921_010 Hb_010921_010 Hb_000444_080--Hb_010921_010 Hb_000444_080--Hb_000009_530 Hb_001552_020 Hb_001552_020 Hb_000444_080--Hb_001552_020 Hb_000116_310 Hb_000116_310 Hb_000444_080--Hb_000116_310 Hb_001512_060 Hb_001512_060 Hb_000444_080--Hb_001512_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.6955 33.9921 77.657 26.5103 63.9982 38.4213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.0707 102.573 39.3733 12.954 31.955

CAGE analysis