Hb_000260_800

Information

Type -
Description -
Location Contig260: 592208-593193
Sequence    

Annotation

kegg
ID pop:POPTR_0019s07820g
description hypothetical protein
nr
ID XP_011012114.1
description PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
swissprot
ID Q9M9M9
description Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1
trembl
ID U5FES1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s07820g PE=4 SV=1
Gene Ontology
ID GO:0005747
description probable nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27072: 587730-593195
cDNA
(Sanger)
(ID:Location)		 002_E15.ab1: 587735-593099

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_800 0.0 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
2 Hb_001998_120 0.1094469332 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
3 Hb_002284_150 0.114153948 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
4 Hb_000028_070 0.1147811931 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
5 Hb_012016_010 0.1255683101 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
6 Hb_180424_010 0.1301980877 - - Charged multivesicular body protein, putative [Ricinus communis]
7 Hb_001377_030 0.1323319582 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
8 Hb_002343_040 0.1345259297 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_005194_020 0.1353307921 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
10 Hb_003621_020 0.1360119734 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
11 Hb_000000_210 0.1360785496 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
12 Hb_004934_030 0.1367808907 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
13 Hb_000975_220 0.1369874255 - - Histone H2B [Medicago truncatula]
14 Hb_004312_010 0.1390234208 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
15 Hb_000035_250 0.1398511854 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
16 Hb_001956_040 0.1426123627 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001195_040 0.1428223343 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
18 Hb_001953_070 0.1434436844 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
19 Hb_002028_140 0.1443906326 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
20 Hb_000958_130 0.1449520269 - - PREDICTED: uncharacterized protein LOC105628716 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_800 Hb_000260_800 Hb_001998_120 Hb_001998_120 Hb_000260_800--Hb_001998_120 Hb_002284_150 Hb_002284_150 Hb_000260_800--Hb_002284_150 Hb_000028_070 Hb_000028_070 Hb_000260_800--Hb_000028_070 Hb_012016_010 Hb_012016_010 Hb_000260_800--Hb_012016_010 Hb_180424_010 Hb_180424_010 Hb_000260_800--Hb_180424_010 Hb_001377_030 Hb_001377_030 Hb_000260_800--Hb_001377_030 Hb_001998_120--Hb_012016_010 Hb_004934_030 Hb_004934_030 Hb_001998_120--Hb_004934_030 Hb_000633_020 Hb_000633_020 Hb_001998_120--Hb_000633_020 Hb_000444_080 Hb_000444_080 Hb_001998_120--Hb_000444_080 Hb_001476_070 Hb_001476_070 Hb_001998_120--Hb_001476_070 Hb_001517_050 Hb_001517_050 Hb_002284_150--Hb_001517_050 Hb_012340_090 Hb_012340_090 Hb_002284_150--Hb_012340_090 Hb_003213_010 Hb_003213_010 Hb_002284_150--Hb_003213_010 Hb_000300_260 Hb_000300_260 Hb_002284_150--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_002284_150--Hb_000649_230 Hb_002946_190 Hb_002946_190 Hb_002284_150--Hb_002946_190 Hb_004410_080 Hb_004410_080 Hb_000028_070--Hb_004410_080 Hb_000028_070--Hb_001998_120 Hb_000028_070--Hb_002946_190 Hb_011519_010 Hb_011519_010 Hb_000028_070--Hb_011519_010 Hb_000163_100 Hb_000163_100 Hb_000028_070--Hb_000163_100 Hb_000638_290 Hb_000638_290 Hb_012016_010--Hb_000638_290 Hb_000009_530 Hb_000009_530 Hb_012016_010--Hb_000009_530 Hb_003621_020 Hb_003621_020 Hb_012016_010--Hb_003621_020 Hb_004093_090 Hb_004093_090 Hb_012016_010--Hb_004093_090 Hb_012016_010--Hb_000444_080 Hb_000000_210 Hb_000000_210 Hb_180424_010--Hb_000000_210 Hb_000853_430 Hb_000853_430 Hb_180424_010--Hb_000853_430 Hb_005488_140 Hb_005488_140 Hb_180424_010--Hb_005488_140 Hb_000856_380 Hb_000856_380 Hb_180424_010--Hb_000856_380 Hb_180424_010--Hb_004410_080 Hb_004678_040 Hb_004678_040 Hb_180424_010--Hb_004678_040 Hb_003050_110 Hb_003050_110 Hb_001377_030--Hb_003050_110 Hb_002450_040 Hb_002450_040 Hb_001377_030--Hb_002450_040 Hb_000000_360 Hb_000000_360 Hb_001377_030--Hb_000000_360 Hb_140833_010 Hb_140833_010 Hb_001377_030--Hb_140833_010 Hb_001377_030--Hb_004934_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.6347 52.5876 191.335 46.5091 67.7074 37.9802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.1111 120.087 66.3642 17.2926 36.8552

CAGE analysis