Hb_000028_070

Information

Type -
Description -
Location Contig28: 84778-86606
Sequence    

Annotation

kegg
ID rcu:RCOM_0569900
description hypothetical protein
nr
ID XP_012086269.1
description PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
swissprot
ID B0BN95
description Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
trembl
ID B9SXS9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0569900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29173: 85694-86212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_070 0.0 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
2 Hb_004410_080 0.1145630322 - - cellular nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000260_800 0.1147811931 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
4 Hb_001998_120 0.1150921571 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
5 Hb_002946_190 0.1170944836 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
6 Hb_011519_010 0.117135929 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
7 Hb_000163_100 0.1191608085 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
8 Hb_001863_380 0.1193110031 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
9 Hb_000175_340 0.1226439635 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
10 Hb_003728_060 0.1226778895 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
11 Hb_004041_020 0.1251454567 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
12 Hb_000000_210 0.1254463043 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
13 Hb_002343_040 0.1260364215 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004157_020 0.1269616785 - - PREDICTED: histone H2B-like [Gossypium raimondii]
15 Hb_007811_040 0.1285250078 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
16 Hb_000413_240 0.1285396335 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
17 Hb_002168_060 0.1295094628 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
18 Hb_000633_020 0.1307110608 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
19 Hb_020805_080 0.1312259401 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
20 Hb_003813_030 0.1346838181 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_070 Hb_000028_070 Hb_004410_080 Hb_004410_080 Hb_000028_070--Hb_004410_080 Hb_000260_800 Hb_000260_800 Hb_000028_070--Hb_000260_800 Hb_001998_120 Hb_001998_120 Hb_000028_070--Hb_001998_120 Hb_002946_190 Hb_002946_190 Hb_000028_070--Hb_002946_190 Hb_011519_010 Hb_011519_010 Hb_000028_070--Hb_011519_010 Hb_000163_100 Hb_000163_100 Hb_000028_070--Hb_000163_100 Hb_000633_020 Hb_000633_020 Hb_004410_080--Hb_000633_020 Hb_000656_240 Hb_000656_240 Hb_004410_080--Hb_000656_240 Hb_004157_020 Hb_004157_020 Hb_004410_080--Hb_004157_020 Hb_032264_070 Hb_032264_070 Hb_004410_080--Hb_032264_070 Hb_004410_080--Hb_011519_010 Hb_000367_160 Hb_000367_160 Hb_004410_080--Hb_000367_160 Hb_000260_800--Hb_001998_120 Hb_002284_150 Hb_002284_150 Hb_000260_800--Hb_002284_150 Hb_012016_010 Hb_012016_010 Hb_000260_800--Hb_012016_010 Hb_180424_010 Hb_180424_010 Hb_000260_800--Hb_180424_010 Hb_001377_030 Hb_001377_030 Hb_000260_800--Hb_001377_030 Hb_001998_120--Hb_012016_010 Hb_004934_030 Hb_004934_030 Hb_001998_120--Hb_004934_030 Hb_001998_120--Hb_000633_020 Hb_000444_080 Hb_000444_080 Hb_001998_120--Hb_000444_080 Hb_001476_070 Hb_001476_070 Hb_001998_120--Hb_001476_070 Hb_004041_020 Hb_004041_020 Hb_002946_190--Hb_004041_020 Hb_000690_190 Hb_000690_190 Hb_002946_190--Hb_000690_190 Hb_001863_380 Hb_001863_380 Hb_002946_190--Hb_001863_380 Hb_146673_010 Hb_146673_010 Hb_002946_190--Hb_146673_010 Hb_000413_240 Hb_000413_240 Hb_002946_190--Hb_000413_240 Hb_001472_100 Hb_001472_100 Hb_002946_190--Hb_001472_100 Hb_004162_130 Hb_004162_130 Hb_011519_010--Hb_004162_130 Hb_032202_140 Hb_032202_140 Hb_011519_010--Hb_032202_140 Hb_002600_020 Hb_002600_020 Hb_011519_010--Hb_002600_020 Hb_000917_060 Hb_000917_060 Hb_011519_010--Hb_000917_060 Hb_000465_160 Hb_000465_160 Hb_011519_010--Hb_000465_160 Hb_000163_100--Hb_000413_240 Hb_000413_060 Hb_000413_060 Hb_000163_100--Hb_000413_060 Hb_000163_100--Hb_001863_380 Hb_000163_100--Hb_002946_190 Hb_000012_250 Hb_000012_250 Hb_000163_100--Hb_000012_250 Hb_000429_040 Hb_000429_040 Hb_000163_100--Hb_000429_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19288 1.69727 9.203 2.66602 3.64319 3.13201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.02988 7.36571 5.51407 1.71207 2.59599

CAGE analysis