Hb_001377_030

Information

Type -
Description -
Location Contig1377: 25856-32009
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09210g
description POPTRDRAFT_774482; centromeric histone H3 HTR12 family protein
nr
ID XP_012083238.1
description PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
swissprot
ID Q8RVQ9
description Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=1 SV=3
trembl
ID A0A067K0B8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14279 PE=4 SV=1
Gene Ontology
ID GO:0000786
description histone h3-like centromeric protein htr12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10358: 32729-37510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_030 0.0 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
2 Hb_003050_110 0.1136193638 - - PREDICTED: prefoldin subunit 6 [Populus euphratica]
3 Hb_002450_040 0.1167515731 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
4 Hb_000000_360 0.1202185458 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
5 Hb_140833_010 0.1303322309 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
6 Hb_004934_030 0.1318849081 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
7 Hb_000260_800 0.1323319582 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
8 Hb_007313_090 0.1376680329 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001956_040 0.1393628755 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_001195_040 0.1397890637 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
11 Hb_001373_110 0.1411014383 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
12 Hb_002876_350 0.1413886472 - - PREDICTED: gibberellin-regulated protein 9-like isoform X2 [Citrus sinensis]
13 Hb_000958_130 0.1415195868 - - PREDICTED: uncharacterized protein LOC105628716 isoform X1 [Jatropha curcas]
14 Hb_001476_070 0.1421140312 - - MinE protein [Manihot esculenta]
15 Hb_002284_150 0.1435630043 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
16 Hb_007101_160 0.1451170371 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001269_640 0.1462074214 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
18 Hb_011013_010 0.1464556857 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
19 Hb_000926_180 0.1465240389 - - proline synthetase associated protein, putative [Ricinus communis]
20 Hb_000694_040 0.1467452629 - - Uncharacterized protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001377_030 Hb_001377_030 Hb_003050_110 Hb_003050_110 Hb_001377_030--Hb_003050_110 Hb_002450_040 Hb_002450_040 Hb_001377_030--Hb_002450_040 Hb_000000_360 Hb_000000_360 Hb_001377_030--Hb_000000_360 Hb_140833_010 Hb_140833_010 Hb_001377_030--Hb_140833_010 Hb_004934_030 Hb_004934_030 Hb_001377_030--Hb_004934_030 Hb_000260_800 Hb_000260_800 Hb_001377_030--Hb_000260_800 Hb_001269_640 Hb_001269_640 Hb_003050_110--Hb_001269_640 Hb_001476_070 Hb_001476_070 Hb_003050_110--Hb_001476_070 Hb_003050_110--Hb_004934_030 Hb_000331_250 Hb_000331_250 Hb_003050_110--Hb_000331_250 Hb_001114_160 Hb_001114_160 Hb_003050_110--Hb_001114_160 Hb_000926_180 Hb_000926_180 Hb_002450_040--Hb_000926_180 Hb_007313_090 Hb_007313_090 Hb_002450_040--Hb_007313_090 Hb_001373_110 Hb_001373_110 Hb_002450_040--Hb_001373_110 Hb_000297_110 Hb_000297_110 Hb_002450_040--Hb_000297_110 Hb_000976_260 Hb_000976_260 Hb_002450_040--Hb_000976_260 Hb_000000_360--Hb_140833_010 Hb_000694_040 Hb_000694_040 Hb_000000_360--Hb_000694_040 Hb_001579_230 Hb_001579_230 Hb_000000_360--Hb_001579_230 Hb_005588_030 Hb_005588_030 Hb_000000_360--Hb_005588_030 Hb_010315_060 Hb_010315_060 Hb_000000_360--Hb_010315_060 Hb_002820_110 Hb_002820_110 Hb_000000_360--Hb_002820_110 Hb_140833_010--Hb_001373_110 Hb_000661_140 Hb_000661_140 Hb_140833_010--Hb_000661_140 Hb_140833_010--Hb_005588_030 Hb_140833_010--Hb_000694_040 Hb_011013_010 Hb_011013_010 Hb_140833_010--Hb_011013_010 Hb_004934_030--Hb_000694_040 Hb_003607_150 Hb_003607_150 Hb_004934_030--Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_004934_030--Hb_005186_050 Hb_004934_030--Hb_000331_250 Hb_000000_210 Hb_000000_210 Hb_004934_030--Hb_000000_210 Hb_001998_120 Hb_001998_120 Hb_004934_030--Hb_001998_120 Hb_000260_800--Hb_001998_120 Hb_002284_150 Hb_002284_150 Hb_000260_800--Hb_002284_150 Hb_000028_070 Hb_000028_070 Hb_000260_800--Hb_000028_070 Hb_012016_010 Hb_012016_010 Hb_000260_800--Hb_012016_010 Hb_180424_010 Hb_180424_010 Hb_000260_800--Hb_180424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1915 2.91788 29.1899 6.22651 12.0281 9.36569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.53391 13.1207 6.42933 3.48472 3.98776

CAGE analysis