Hb_001114_160

Information

Type -
Description -
Location Contig1114: 175080-179254
Sequence    

Annotation

kegg
ID rcu:RCOM_0885400
description carbonic anhydrase, putative (EC:4.2.1.1)
nr
ID XP_012069194.1
description PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
swissprot
ID Q94CE3
description Beta carbonic anhydrase 5, chloroplastic OS=Arabidopsis thaliana GN=BCA5 PE=2 SV=1
trembl
ID A0A067LA40
description Carbonic anhydrase OS=Jatropha curcas GN=JCGZ_24983 PE=3 SV=1
Gene Ontology
ID GO:0009507
description beta carbonic anhydrase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03497: 175110-179161 , PASA_asmbl_03498: 177508-177942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_160 0.0 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
2 Hb_002972_010 0.1233905828 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
3 Hb_114336_030 0.1246723545 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
4 Hb_001097_100 0.1268607394 - - Chaperone DnaJ-domain superfamily protein [Theobroma cacao]
5 Hb_029510_020 0.1298053161 - - hypothetical protein JCGZ_06306 [Jatropha curcas]
6 Hb_003848_040 0.1392317528 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
7 Hb_003556_030 0.1408332078 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
8 Hb_158144_010 0.1450063942 - - -
9 Hb_000105_050 0.1458104152 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
10 Hb_001396_210 0.1480881349 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003050_110 0.1493679915 - - PREDICTED: prefoldin subunit 6 [Populus euphratica]
12 Hb_012340_090 0.1526272037 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
13 Hb_004093_020 0.1528811413 - - Calcium-binding EF-hand family protein [Theobroma cacao]
14 Hb_002284_150 0.1542635189 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
15 Hb_001105_170 0.1547371822 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
16 Hb_001476_070 0.1563599328 - - MinE protein [Manihot esculenta]
17 Hb_001056_030 0.1569535929 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
18 Hb_001623_100 0.1613546336 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
19 Hb_001328_030 0.1618675973 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
20 Hb_001269_640 0.1628638445 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]

Gene co-expression network

sample Hb_001114_160 Hb_001114_160 Hb_002972_010 Hb_002972_010 Hb_001114_160--Hb_002972_010 Hb_114336_030 Hb_114336_030 Hb_001114_160--Hb_114336_030 Hb_001097_100 Hb_001097_100 Hb_001114_160--Hb_001097_100 Hb_029510_020 Hb_029510_020 Hb_001114_160--Hb_029510_020 Hb_003848_040 Hb_003848_040 Hb_001114_160--Hb_003848_040 Hb_003556_030 Hb_003556_030 Hb_001114_160--Hb_003556_030 Hb_001056_030 Hb_001056_030 Hb_002972_010--Hb_001056_030 Hb_002972_010--Hb_003556_030 Hb_001712_070 Hb_001712_070 Hb_002972_010--Hb_001712_070 Hb_000390_090 Hb_000390_090 Hb_002972_010--Hb_000390_090 Hb_000413_060 Hb_000413_060 Hb_002972_010--Hb_000413_060 Hb_114336_030--Hb_001097_100 Hb_182424_030 Hb_182424_030 Hb_114336_030--Hb_182424_030 Hb_000170_200 Hb_000170_200 Hb_114336_030--Hb_000170_200 Hb_001221_320 Hb_001221_320 Hb_114336_030--Hb_001221_320 Hb_114336_030--Hb_003848_040 Hb_001699_210 Hb_001699_210 Hb_001097_100--Hb_001699_210 Hb_032202_180 Hb_032202_180 Hb_001097_100--Hb_032202_180 Hb_000228_090 Hb_000228_090 Hb_001097_100--Hb_000228_090 Hb_012340_090 Hb_012340_090 Hb_001097_100--Hb_012340_090 Hb_003185_110 Hb_003185_110 Hb_029510_020--Hb_003185_110 Hb_002783_270 Hb_002783_270 Hb_029510_020--Hb_002783_270 Hb_005773_060 Hb_005773_060 Hb_029510_020--Hb_005773_060 Hb_004934_030 Hb_004934_030 Hb_029510_020--Hb_004934_030 Hb_001476_070 Hb_001476_070 Hb_029510_020--Hb_001476_070 Hb_002900_160 Hb_002900_160 Hb_029510_020--Hb_002900_160 Hb_001105_170 Hb_001105_170 Hb_003848_040--Hb_001105_170 Hb_012565_070 Hb_012565_070 Hb_003848_040--Hb_012565_070 Hb_003848_040--Hb_012340_090 Hb_003207_180 Hb_003207_180 Hb_003848_040--Hb_003207_180 Hb_000300_260 Hb_000300_260 Hb_003848_040--Hb_000300_260 Hb_001472_100 Hb_001472_100 Hb_003848_040--Hb_001472_100 Hb_003556_030--Hb_000413_060 Hb_001329_090 Hb_001329_090 Hb_003556_030--Hb_001329_090 Hb_000905_120 Hb_000905_120 Hb_003556_030--Hb_000905_120 Hb_000413_240 Hb_000413_240 Hb_003556_030--Hb_000413_240 Hb_003556_030--Hb_000390_090 Hb_003077_150 Hb_003077_150 Hb_003556_030--Hb_003077_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.01893 2.0565 14.433 7.27851 4.3152 3.34686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.77632 9.62668 1.38591 1.41363 3.88422

CAGE analysis