Hb_001712_070

Information

Type -
Description -
Location Contig1712: 61328-66019
Sequence    

Annotation

kegg
ID rcu:RCOM_1464460
description catalytic, putative
nr
ID XP_012081988.1
description PREDICTED: HD domain-containing protein 2 [Jatropha curcas]
swissprot
ID Q54FK1
description HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1
trembl
ID A0A067KBY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16012: 61409-61904 , PASA_asmbl_16013: 64810-65377 , PASA_asmbl_16014: 63151-65480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001712_070 0.0 - - PREDICTED: HD domain-containing protein 2 [Jatropha curcas]
2 Hb_000185_050 0.1012805901 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
3 Hb_000690_190 0.1120474596 - - 40S ribosomal protein S7, putative [Ricinus communis]
4 Hb_002307_180 0.1160725206 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
5 Hb_015299_030 0.12702557 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
6 Hb_000215_090 0.1270721309 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
7 Hb_000390_090 0.1272192769 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
8 Hb_002946_190 0.1288748535 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
9 Hb_000318_210 0.129303637 - - PREDICTED: 40S ribosomal protein S12-like isoform X1 [Jatropha curcas]
10 Hb_002972_010 0.1297186657 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
11 Hb_001105_170 0.1297908639 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
12 Hb_000413_240 0.1312359694 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
13 Hb_000413_060 0.1338317621 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
14 Hb_004041_020 0.1339794152 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
15 Hb_000599_260 0.1351205834 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
16 Hb_111844_010 0.1363219846 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
17 Hb_032202_100 0.1388584254 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
18 Hb_001804_080 0.1438846002 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
19 Hb_002471_250 0.1457324427 - - Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]
20 Hb_003556_030 0.1469093438 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001712_070 Hb_001712_070 Hb_000185_050 Hb_000185_050 Hb_001712_070--Hb_000185_050 Hb_000690_190 Hb_000690_190 Hb_001712_070--Hb_000690_190 Hb_002307_180 Hb_002307_180 Hb_001712_070--Hb_002307_180 Hb_015299_030 Hb_015299_030 Hb_001712_070--Hb_015299_030 Hb_000215_090 Hb_000215_090 Hb_001712_070--Hb_000215_090 Hb_000390_090 Hb_000390_090 Hb_001712_070--Hb_000390_090 Hb_001472_100 Hb_001472_100 Hb_000185_050--Hb_001472_100 Hb_002946_190 Hb_002946_190 Hb_000185_050--Hb_002946_190 Hb_000731_160 Hb_000731_160 Hb_000185_050--Hb_000731_160 Hb_111036_010 Hb_111036_010 Hb_000185_050--Hb_111036_010 Hb_000185_050--Hb_000690_190 Hb_003942_020 Hb_003942_020 Hb_000185_050--Hb_003942_020 Hb_000690_190--Hb_002946_190 Hb_000690_190--Hb_002307_180 Hb_000599_260 Hb_000599_260 Hb_000690_190--Hb_000599_260 Hb_007878_010 Hb_007878_010 Hb_000690_190--Hb_007878_010 Hb_161574_020 Hb_161574_020 Hb_000690_190--Hb_161574_020 Hb_002171_060 Hb_002171_060 Hb_000690_190--Hb_002171_060 Hb_002307_180--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_002307_180--Hb_012565_070 Hb_000270_310 Hb_000270_310 Hb_002307_180--Hb_000270_310 Hb_000270_470 Hb_000270_470 Hb_002307_180--Hb_000270_470 Hb_032202_100 Hb_032202_100 Hb_002307_180--Hb_032202_100 Hb_001188_030 Hb_001188_030 Hb_015299_030--Hb_001188_030 Hb_001431_080 Hb_001431_080 Hb_015299_030--Hb_001431_080 Hb_002811_170 Hb_002811_170 Hb_015299_030--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_015299_030--Hb_000946_090 Hb_001931_010 Hb_001931_010 Hb_015299_030--Hb_001931_010 Hb_098315_020 Hb_098315_020 Hb_015299_030--Hb_098315_020 Hb_000215_090--Hb_032202_100 Hb_004357_050 Hb_004357_050 Hb_000215_090--Hb_004357_050 Hb_000130_270 Hb_000130_270 Hb_000215_090--Hb_000130_270 Hb_002471_250 Hb_002471_250 Hb_000215_090--Hb_002471_250 Hb_005288_130 Hb_005288_130 Hb_000215_090--Hb_005288_130 Hb_003207_180 Hb_003207_180 Hb_000215_090--Hb_003207_180 Hb_000413_240 Hb_000413_240 Hb_000390_090--Hb_000413_240 Hb_009252_060 Hb_009252_060 Hb_000390_090--Hb_009252_060 Hb_000413_060 Hb_000413_060 Hb_000390_090--Hb_000413_060 Hb_000163_100 Hb_000163_100 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_011053_010 Hb_011053_010 Hb_000390_090--Hb_011053_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0496 1.08638 6.40849 2.89525 2.35783 2.1139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22079 7.47211 0.956476 1.69703 2.24155

CAGE analysis