Hb_000215_090

Information

Type -
Description -
Location Contig215: 61885-64574
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09460g
description POPTRDRAFT_578539; cytochrome b5 domain-containing family protein
nr
ID XP_002324451.1
description cytochrome b5 domain-containing family protein [Populus trichocarpa]
swissprot
ID O22704
description Cytochrome B5-like protein OS=Arabidopsis thaliana GN=CB5LP PE=2 SV=1
trembl
ID B9ILU4
description Cytochrome b5 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0018s09460g PE=3 SV=1
Gene Ontology
ID GO:0004128
description cytochrome b5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22173: 63079-63454 , PASA_asmbl_22174: 61871-64522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_090 0.0 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
2 Hb_032202_100 0.084285931 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
3 Hb_004357_050 0.0843857819 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
4 Hb_000130_270 0.0940692521 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
5 Hb_002471_250 0.0989036392 - - Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]
6 Hb_005288_130 0.1028567737 - - protein with unknown function [Ricinus communis]
7 Hb_003207_180 0.1055519719 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
8 Hb_000185_050 0.1066076801 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
9 Hb_000690_190 0.1087922841 - - 40S ribosomal protein S7, putative [Ricinus communis]
10 Hb_001396_210 0.1096592834 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001472_100 0.1102449659 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
12 Hb_000599_260 0.1110937157 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
13 Hb_000270_680 0.1122376336 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
14 Hb_003848_040 0.1127808397 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
15 Hb_000946_090 0.1127884528 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
16 Hb_161574_020 0.1129324323 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
17 Hb_000035_160 0.1147833101 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
18 Hb_124373_010 0.1179266217 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
19 Hb_000359_150 0.1188496681 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
20 Hb_000116_490 0.1192764659 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000215_090 Hb_000215_090 Hb_032202_100 Hb_032202_100 Hb_000215_090--Hb_032202_100 Hb_004357_050 Hb_004357_050 Hb_000215_090--Hb_004357_050 Hb_000130_270 Hb_000130_270 Hb_000215_090--Hb_000130_270 Hb_002471_250 Hb_002471_250 Hb_000215_090--Hb_002471_250 Hb_005288_130 Hb_005288_130 Hb_000215_090--Hb_005288_130 Hb_003207_180 Hb_003207_180 Hb_000215_090--Hb_003207_180 Hb_032202_100--Hb_000130_270 Hb_000926_200 Hb_000926_200 Hb_032202_100--Hb_000926_200 Hb_155215_020 Hb_155215_020 Hb_032202_100--Hb_155215_020 Hb_000035_160 Hb_000035_160 Hb_032202_100--Hb_000035_160 Hb_000946_090 Hb_000946_090 Hb_032202_100--Hb_000946_090 Hb_161574_020 Hb_161574_020 Hb_032202_100--Hb_161574_020 Hb_004357_050--Hb_005288_130 Hb_000116_490 Hb_000116_490 Hb_004357_050--Hb_000116_490 Hb_004109_340 Hb_004109_340 Hb_004357_050--Hb_004109_340 Hb_004357_050--Hb_032202_100 Hb_004357_050--Hb_000130_270 Hb_000130_270--Hb_161574_020 Hb_163175_010 Hb_163175_010 Hb_000130_270--Hb_163175_010 Hb_006846_130 Hb_006846_130 Hb_000130_270--Hb_006846_130 Hb_000076_220 Hb_000076_220 Hb_000130_270--Hb_000076_220 Hb_000086_170 Hb_000086_170 Hb_000130_270--Hb_000086_170 Hb_093666_010 Hb_093666_010 Hb_002471_250--Hb_093666_010 Hb_000950_070 Hb_000950_070 Hb_002471_250--Hb_000950_070 Hb_000270_470 Hb_000270_470 Hb_002471_250--Hb_000270_470 Hb_001186_090 Hb_001186_090 Hb_002471_250--Hb_001186_090 Hb_003848_040 Hb_003848_040 Hb_002471_250--Hb_003848_040 Hb_000398_060 Hb_000398_060 Hb_005288_130--Hb_000398_060 Hb_005288_130--Hb_000116_490 Hb_005288_130--Hb_163175_010 Hb_000840_200 Hb_000840_200 Hb_005288_130--Hb_000840_200 Hb_065525_080 Hb_065525_080 Hb_005288_130--Hb_065525_080 Hb_000663_060 Hb_000663_060 Hb_005288_130--Hb_000663_060 Hb_001472_100 Hb_001472_100 Hb_003207_180--Hb_001472_100 Hb_000260_630 Hb_000260_630 Hb_003207_180--Hb_000260_630 Hb_000300_260 Hb_000300_260 Hb_003207_180--Hb_000300_260 Hb_003207_180--Hb_003848_040 Hb_000069_720 Hb_000069_720 Hb_003207_180--Hb_000069_720 Hb_003207_180--Hb_000130_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.94237 3.5692 16.5721 14.0764 6.02447 7.80945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27565 14.5646 2.8903 7.9506 6.64746

CAGE analysis