Hb_002471_250

Information

Type -
Description -
Location Contig2471: 258946-260873
Sequence    

Annotation

kegg
ID cit:102611831
description protein POLLEN DEFECTIVE IN GUIDANCE 1-like
nr
ID XP_007045503.1
description Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]
swissprot
ID F4HVJ3
description Protein POLLEN DEFECTIVE IN GUIDANCE 1 OS=Arabidopsis thaliana GN=POD1 PE=1 SV=1
trembl
ID A0A061E8K2
description Tapt1/CMV receptor, putative isoform 2 OS=Theobroma cacao GN=TCM_011265 PE=4 SV=1
Gene Ontology
ID GO:0005783
description protein pollen defective in guidance 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25676: 259098-259362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_250 0.0 - - Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]
2 Hb_093666_010 0.0884917655 - - BnaC05g06620D [Brassica napus]
3 Hb_000215_090 0.0989036392 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
4 Hb_000950_070 0.1002561002 - - PREDICTED: uncharacterized protein LOC105645259 isoform X2 [Jatropha curcas]
5 Hb_000270_470 0.1054866742 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
6 Hb_001186_090 0.1099054559 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
7 Hb_003848_040 0.1166704242 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
8 Hb_001699_210 0.1170873851 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
9 Hb_001396_210 0.1182452255 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029351_010 0.1188145658 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
11 Hb_000270_680 0.1195935329 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
12 Hb_000690_190 0.1196809203 - - 40S ribosomal protein S7, putative [Ricinus communis]
13 Hb_012340_090 0.1199918 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
14 Hb_002092_120 0.1201703632 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
15 Hb_000789_320 0.1204944328 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
16 Hb_065525_080 0.1220976819 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
17 Hb_001541_050 0.1231031974 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
18 Hb_022181_030 0.1236543955 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
19 Hb_002820_050 0.1237836141 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
20 Hb_001025_090 0.1247178463 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]

Gene co-expression network

sample Hb_002471_250 Hb_002471_250 Hb_093666_010 Hb_093666_010 Hb_002471_250--Hb_093666_010 Hb_000215_090 Hb_000215_090 Hb_002471_250--Hb_000215_090 Hb_000950_070 Hb_000950_070 Hb_002471_250--Hb_000950_070 Hb_000270_470 Hb_000270_470 Hb_002471_250--Hb_000270_470 Hb_001186_090 Hb_001186_090 Hb_002471_250--Hb_001186_090 Hb_003848_040 Hb_003848_040 Hb_002471_250--Hb_003848_040 Hb_065525_080 Hb_065525_080 Hb_093666_010--Hb_065525_080 Hb_113853_010 Hb_113853_010 Hb_093666_010--Hb_113853_010 Hb_030414_040 Hb_030414_040 Hb_093666_010--Hb_030414_040 Hb_001623_270 Hb_001623_270 Hb_093666_010--Hb_001623_270 Hb_021374_030 Hb_021374_030 Hb_093666_010--Hb_021374_030 Hb_183433_010 Hb_183433_010 Hb_093666_010--Hb_183433_010 Hb_032202_100 Hb_032202_100 Hb_000215_090--Hb_032202_100 Hb_004357_050 Hb_004357_050 Hb_000215_090--Hb_004357_050 Hb_000130_270 Hb_000130_270 Hb_000215_090--Hb_000130_270 Hb_005288_130 Hb_005288_130 Hb_000215_090--Hb_005288_130 Hb_003207_180 Hb_003207_180 Hb_000215_090--Hb_003207_180 Hb_001396_210 Hb_001396_210 Hb_000950_070--Hb_001396_210 Hb_000950_070--Hb_000215_090 Hb_027792_010 Hb_027792_010 Hb_000950_070--Hb_027792_010 Hb_001517_050 Hb_001517_050 Hb_000950_070--Hb_001517_050 Hb_158144_010 Hb_158144_010 Hb_000950_070--Hb_158144_010 Hb_001025_090 Hb_001025_090 Hb_000270_470--Hb_001025_090 Hb_008225_090 Hb_008225_090 Hb_000270_470--Hb_008225_090 Hb_000789_320 Hb_000789_320 Hb_000270_470--Hb_000789_320 Hb_111036_010 Hb_111036_010 Hb_000270_470--Hb_111036_010 Hb_171900_090 Hb_171900_090 Hb_000270_470--Hb_171900_090 Hb_000176_020 Hb_000176_020 Hb_000270_470--Hb_000176_020 Hb_000331_110 Hb_000331_110 Hb_001186_090--Hb_000331_110 Hb_000260_680 Hb_000260_680 Hb_001186_090--Hb_000260_680 Hb_003943_050 Hb_003943_050 Hb_001186_090--Hb_003943_050 Hb_003159_140 Hb_003159_140 Hb_001186_090--Hb_003159_140 Hb_022132_050 Hb_022132_050 Hb_001186_090--Hb_022132_050 Hb_002119_080 Hb_002119_080 Hb_001186_090--Hb_002119_080 Hb_001105_170 Hb_001105_170 Hb_003848_040--Hb_001105_170 Hb_012565_070 Hb_012565_070 Hb_003848_040--Hb_012565_070 Hb_012340_090 Hb_012340_090 Hb_003848_040--Hb_012340_090 Hb_003848_040--Hb_003207_180 Hb_000300_260 Hb_000300_260 Hb_003848_040--Hb_000300_260 Hb_001472_100 Hb_001472_100 Hb_003848_040--Hb_001472_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74228 1.43611 5.48497 3.10463 1.62493 3.50647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.66986 4.13417 0.680934 2.07026 2.64162

CAGE analysis