Hb_001396_210

Information

Type -
Description -
Location Contig1396: 156120-157511
Sequence    

Annotation

kegg
ID rcu:RCOM_1079710
description hypothetical protein
nr
ID XP_002514899.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMD0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079710 PE=4 SV=1
Gene Ontology
ID GO:0012505
description ciliary neurotrophic factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10759: 150265-155554 , PASA_asmbl_10760: 156174-157463
cDNA
(Sanger)
(ID:Location)		 038_I17.ab1: 156174-156924 , 040_K17.ab1: 156174-156924

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012340_090 0.0872743931 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
3 Hb_001025_090 0.0962030635 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
4 Hb_003848_040 0.0980592474 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
5 Hb_002092_120 0.0988494641 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
6 Hb_001105_170 0.1040658372 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
7 Hb_000270_470 0.1094191295 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
8 Hb_000215_090 0.1096592834 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
9 Hb_000300_260 0.1102243477 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
10 Hb_002811_290 0.1106247551 - - aldo/keto reductase, putative [Ricinus communis]
11 Hb_182424_030 0.1140508806 - - PREDICTED: conserved oligomeric Golgi complex subunit 8 [Vitis vinifera]
12 Hb_002471_250 0.1182452255 - - Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]
13 Hb_001517_050 0.1187714442 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
14 Hb_000130_270 0.1199529662 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
15 Hb_000270_680 0.1206842677 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
16 Hb_000035_250 0.122152174 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
17 Hb_001804_090 0.1231189008 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
18 Hb_008225_090 0.1231293395 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
19 Hb_003207_180 0.1251148546 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
20 Hb_146255_020 0.1252250042 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]

Gene co-expression network

sample Hb_001396_210 Hb_001396_210 Hb_012340_090 Hb_012340_090 Hb_001396_210--Hb_012340_090 Hb_001025_090 Hb_001025_090 Hb_001396_210--Hb_001025_090 Hb_003848_040 Hb_003848_040 Hb_001396_210--Hb_003848_040 Hb_002092_120 Hb_002092_120 Hb_001396_210--Hb_002092_120 Hb_001105_170 Hb_001105_170 Hb_001396_210--Hb_001105_170 Hb_000270_470 Hb_000270_470 Hb_001396_210--Hb_000270_470 Hb_012340_090--Hb_001105_170 Hb_002343_040 Hb_002343_040 Hb_012340_090--Hb_002343_040 Hb_000035_250 Hb_000035_250 Hb_012340_090--Hb_000035_250 Hb_012340_090--Hb_001025_090 Hb_012340_090--Hb_003848_040 Hb_002284_150 Hb_002284_150 Hb_012340_090--Hb_002284_150 Hb_004807_020 Hb_004807_020 Hb_001025_090--Hb_004807_020 Hb_001025_090--Hb_000270_470 Hb_171900_090 Hb_171900_090 Hb_001025_090--Hb_171900_090 Hb_000176_020 Hb_000176_020 Hb_001025_090--Hb_000176_020 Hb_000789_320 Hb_000789_320 Hb_001025_090--Hb_000789_320 Hb_000875_080 Hb_000875_080 Hb_001025_090--Hb_000875_080 Hb_003848_040--Hb_001105_170 Hb_012565_070 Hb_012565_070 Hb_003848_040--Hb_012565_070 Hb_003207_180 Hb_003207_180 Hb_003848_040--Hb_003207_180 Hb_000300_260 Hb_000300_260 Hb_003848_040--Hb_000300_260 Hb_001472_100 Hb_001472_100 Hb_003848_040--Hb_001472_100 Hb_008225_090 Hb_008225_090 Hb_002092_120--Hb_008225_090 Hb_002092_120--Hb_000300_260 Hb_002092_120--Hb_000176_020 Hb_002893_040 Hb_002893_040 Hb_002092_120--Hb_002893_040 Hb_002572_020 Hb_002572_020 Hb_002092_120--Hb_002572_020 Hb_002092_120--Hb_000270_470 Hb_001105_170--Hb_002343_040 Hb_001863_380 Hb_001863_380 Hb_001105_170--Hb_001863_380 Hb_001105_170--Hb_012565_070 Hb_001105_170--Hb_000300_260 Hb_000270_470--Hb_008225_090 Hb_000270_470--Hb_000789_320 Hb_111036_010 Hb_111036_010 Hb_000270_470--Hb_111036_010 Hb_000270_470--Hb_171900_090 Hb_000270_470--Hb_000176_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.118 10.3331 39.7879 21.2933 8.89782 9.40941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9778 22.8971 5.14308 15.6164 12.2421

CAGE analysis