Hb_000035_250

Information

Type -
Description -
Location Contig35: 298573-301929
Sequence    

Annotation

kegg
ID rcu:RCOM_0920830
description hypothetical protein
nr
ID XP_012076416.1
description PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
swissprot
ID Q5ZHS3
description Nuclear nucleic acid-binding protein C1D OS=Gallus gallus GN=C1D PE=2 SV=1
trembl
ID A0A067KBA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07077 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36419: 298564-301940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_250 0.0 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
2 Hb_001671_040 0.0655089877 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
3 Hb_012340_090 0.0735485819 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
4 Hb_001953_070 0.0948974449 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
5 Hb_004128_200 0.0994775609 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
6 Hb_002343_040 0.1012705361 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_002284_150 0.1079798159 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
8 Hb_006615_050 0.1103954292 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
9 Hb_001025_090 0.1107317988 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
10 Hb_005389_100 0.1133535574 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
11 Hb_000975_220 0.1142456335 - - Histone H2B [Medicago truncatula]
12 Hb_065755_030 0.1148003614 - - -
13 Hb_000789_320 0.1153250937 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
14 Hb_000107_030 0.1174764899 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000959_220 0.1180907646 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000270_470 0.1182785787 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
17 Hb_146255_020 0.1187900943 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
18 Hb_002542_040 0.1190139613 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
19 Hb_006261_090 0.1201606067 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
20 Hb_001105_170 0.120249366 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_250 Hb_000035_250 Hb_001671_040 Hb_001671_040 Hb_000035_250--Hb_001671_040 Hb_012340_090 Hb_012340_090 Hb_000035_250--Hb_012340_090 Hb_001953_070 Hb_001953_070 Hb_000035_250--Hb_001953_070 Hb_004128_200 Hb_004128_200 Hb_000035_250--Hb_004128_200 Hb_002343_040 Hb_002343_040 Hb_000035_250--Hb_002343_040 Hb_002284_150 Hb_002284_150 Hb_000035_250--Hb_002284_150 Hb_001671_040--Hb_001953_070 Hb_006615_050 Hb_006615_050 Hb_001671_040--Hb_006615_050 Hb_004648_090 Hb_004648_090 Hb_001671_040--Hb_004648_090 Hb_008225_090 Hb_008225_090 Hb_001671_040--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001671_040--Hb_000010_110 Hb_001105_170 Hb_001105_170 Hb_012340_090--Hb_001105_170 Hb_012340_090--Hb_002343_040 Hb_001025_090 Hb_001025_090 Hb_012340_090--Hb_001025_090 Hb_003848_040 Hb_003848_040 Hb_012340_090--Hb_003848_040 Hb_012340_090--Hb_002284_150 Hb_002542_040 Hb_002542_040 Hb_001953_070--Hb_002542_040 Hb_001953_070--Hb_000010_110 Hb_000144_070 Hb_000144_070 Hb_001953_070--Hb_000144_070 Hb_003213_010 Hb_003213_010 Hb_001953_070--Hb_003213_010 Hb_002820_030 Hb_002820_030 Hb_001953_070--Hb_002820_030 Hb_003579_050 Hb_003579_050 Hb_004128_200--Hb_003579_050 Hb_011249_030 Hb_011249_030 Hb_004128_200--Hb_011249_030 Hb_027073_030 Hb_027073_030 Hb_004128_200--Hb_027073_030 Hb_001005_020 Hb_001005_020 Hb_004128_200--Hb_001005_020 Hb_001277_280 Hb_001277_280 Hb_004128_200--Hb_001277_280 Hb_039605_010 Hb_039605_010 Hb_004128_200--Hb_039605_010 Hb_001863_380 Hb_001863_380 Hb_002343_040--Hb_001863_380 Hb_002343_040--Hb_001105_170 Hb_146255_020 Hb_146255_020 Hb_002343_040--Hb_146255_020 Hb_004807_020 Hb_004807_020 Hb_002343_040--Hb_004807_020 Hb_002343_040--Hb_001025_090 Hb_001517_050 Hb_001517_050 Hb_002284_150--Hb_001517_050 Hb_002284_150--Hb_003213_010 Hb_000300_260 Hb_000300_260 Hb_002284_150--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_002284_150--Hb_000649_230 Hb_002946_190 Hb_002946_190 Hb_002284_150--Hb_002946_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5751 11.6219 29.114 7.7273 9.04016 7.11899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7609 15.2993 4.08558 7.18171 8.37675

CAGE analysis