Hb_158144_010

Information

Type -
Description -
Location Contig158144: 2928-4417
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13934: 2165-3197 , PASA_asmbl_13935: 4398-5923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158144_010 0.0 - - -
2 Hb_000422_030 0.1189708734 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
3 Hb_000975_220 0.1208924965 - - Histone H2B [Medicago truncatula]
4 Hb_001269_640 0.1210039805 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
5 Hb_002284_150 0.1227565835 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
6 Hb_002092_120 0.1237333707 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
7 Hb_006570_150 0.1244630764 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
8 Hb_000035_250 0.1273926122 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
9 Hb_006132_110 0.1341808328 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001671_040 0.1350907961 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
11 Hb_000181_090 0.1351887978 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
12 Hb_000105_050 0.1404008708 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
13 Hb_012340_090 0.1404540423 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
14 Hb_001396_210 0.141056232 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008225_090 0.1433183267 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
16 Hb_000270_470 0.1441581501 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
17 Hb_001328_030 0.1443818039 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
18 Hb_001114_160 0.1450063942 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
19 Hb_000300_260 0.1458707328 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
20 Hb_002471_250 0.1460236463 - - Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_158144_010 Hb_158144_010 Hb_000422_030 Hb_000422_030 Hb_158144_010--Hb_000422_030 Hb_000975_220 Hb_000975_220 Hb_158144_010--Hb_000975_220 Hb_001269_640 Hb_001269_640 Hb_158144_010--Hb_001269_640 Hb_002284_150 Hb_002284_150 Hb_158144_010--Hb_002284_150 Hb_002092_120 Hb_002092_120 Hb_158144_010--Hb_002092_120 Hb_006570_150 Hb_006570_150 Hb_158144_010--Hb_006570_150 Hb_000649_230 Hb_000649_230 Hb_000422_030--Hb_000649_230 Hb_000422_030--Hb_001269_640 Hb_000690_190 Hb_000690_190 Hb_000422_030--Hb_000690_190 Hb_156635_010 Hb_156635_010 Hb_000422_030--Hb_156635_010 Hb_010315_060 Hb_010315_060 Hb_000422_030--Hb_010315_060 Hb_022132_050 Hb_022132_050 Hb_000422_030--Hb_022132_050 Hb_001301_240 Hb_001301_240 Hb_000975_220--Hb_001301_240 Hb_000035_250 Hb_000035_250 Hb_000975_220--Hb_000035_250 Hb_000975_220--Hb_002284_150 Hb_000260_800 Hb_000260_800 Hb_000975_220--Hb_000260_800 Hb_001671_040 Hb_001671_040 Hb_000975_220--Hb_001671_040 Hb_000926_180 Hb_000926_180 Hb_001269_640--Hb_000926_180 Hb_001269_640--Hb_010315_060 Hb_000331_250 Hb_000331_250 Hb_001269_640--Hb_000331_250 Hb_027043_020 Hb_027043_020 Hb_001269_640--Hb_027043_020 Hb_001195_260 Hb_001195_260 Hb_001269_640--Hb_001195_260 Hb_001517_050 Hb_001517_050 Hb_002284_150--Hb_001517_050 Hb_012340_090 Hb_012340_090 Hb_002284_150--Hb_012340_090 Hb_003213_010 Hb_003213_010 Hb_002284_150--Hb_003213_010 Hb_000300_260 Hb_000300_260 Hb_002284_150--Hb_000300_260 Hb_002284_150--Hb_000649_230 Hb_002946_190 Hb_002946_190 Hb_002284_150--Hb_002946_190 Hb_008225_090 Hb_008225_090 Hb_002092_120--Hb_008225_090 Hb_002092_120--Hb_000300_260 Hb_000176_020 Hb_000176_020 Hb_002092_120--Hb_000176_020 Hb_002893_040 Hb_002893_040 Hb_002092_120--Hb_002893_040 Hb_002572_020 Hb_002572_020 Hb_002092_120--Hb_002572_020 Hb_000270_470 Hb_000270_470 Hb_002092_120--Hb_000270_470 Hb_000115_080 Hb_000115_080 Hb_006570_150--Hb_000115_080 Hb_006570_150--Hb_002893_040 Hb_002965_040 Hb_002965_040 Hb_006570_150--Hb_002965_040 Hb_001258_100 Hb_001258_100 Hb_006570_150--Hb_001258_100 Hb_009545_090 Hb_009545_090 Hb_006570_150--Hb_009545_090 Hb_006570_150--Hb_002092_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37466 1.31374 3.30303 1.70083 0.698175 1.20722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59587 2.68057 0.513177 0.485732 0.910764

CAGE analysis