Hb_000975_220

Information

Type -
Description -
Location Contig975: 184605-185048
Sequence    

Annotation

kegg
ID mtr:MTR_4g063200
description Histone H2B
nr
ID XP_003606627.1
description Histone H2B [Medicago truncatula]
swissprot
ID Q1S9I9
description Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3
trembl
ID G7JTQ7
description Histone H2B OS=Medicago truncatula GN=MTR_4g063200 PE=2 SV=1
Gene Ontology
ID GO:0000786
description core histone h2a h2b h3 h4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64012: 184433-185094
cDNA
(Sanger)
(ID:Location)		 026_M07.ab1: 184701-185094 , 028_K06.ab1: 184569-185094

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_220 0.0 - - Histone H2B [Medicago truncatula]
2 Hb_001301_240 0.1013842419 - - -
3 Hb_000035_250 0.1142456335 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
4 Hb_002284_150 0.1161341036 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
5 Hb_158144_010 0.1208924965 - - -
6 Hb_000260_800 0.1369874255 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
7 Hb_001671_040 0.1416075658 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
8 Hb_012340_090 0.1426071771 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
9 Hb_004128_200 0.1447357552 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
10 Hb_001517_050 0.1494665709 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
11 Hb_003077_150 0.149500856 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
12 Hb_000975_240 0.1515405846 - - hypothetical protein JCGZ_22006 [Jatropha curcas]
13 Hb_002343_040 0.1525118277 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_005194_020 0.1535413808 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
15 Hb_000181_090 0.1541789334 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
16 Hb_000950_070 0.1548580496 - - PREDICTED: uncharacterized protein LOC105645259 isoform X2 [Jatropha curcas]
17 Hb_007313_090 0.1565103423 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000422_030 0.1582926025 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
19 Hb_003581_210 0.1591706643 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
20 Hb_001277_280 0.1593751738 - - PREDICTED: protein argonaute 10 [Jatropha curcas]

Gene co-expression network

sample Hb_000975_220 Hb_000975_220 Hb_001301_240 Hb_001301_240 Hb_000975_220--Hb_001301_240 Hb_000035_250 Hb_000035_250 Hb_000975_220--Hb_000035_250 Hb_002284_150 Hb_002284_150 Hb_000975_220--Hb_002284_150 Hb_158144_010 Hb_158144_010 Hb_000975_220--Hb_158144_010 Hb_000260_800 Hb_000260_800 Hb_000975_220--Hb_000260_800 Hb_001671_040 Hb_001671_040 Hb_000975_220--Hb_001671_040 Hb_001301_240--Hb_000035_250 Hb_000059_340 Hb_000059_340 Hb_001301_240--Hb_000059_340 Hb_006261_090 Hb_006261_090 Hb_001301_240--Hb_006261_090 Hb_001301_240--Hb_158144_010 Hb_001301_240--Hb_001671_040 Hb_000035_250--Hb_001671_040 Hb_012340_090 Hb_012340_090 Hb_000035_250--Hb_012340_090 Hb_001953_070 Hb_001953_070 Hb_000035_250--Hb_001953_070 Hb_004128_200 Hb_004128_200 Hb_000035_250--Hb_004128_200 Hb_002343_040 Hb_002343_040 Hb_000035_250--Hb_002343_040 Hb_000035_250--Hb_002284_150 Hb_001517_050 Hb_001517_050 Hb_002284_150--Hb_001517_050 Hb_002284_150--Hb_012340_090 Hb_003213_010 Hb_003213_010 Hb_002284_150--Hb_003213_010 Hb_000300_260 Hb_000300_260 Hb_002284_150--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_002284_150--Hb_000649_230 Hb_002946_190 Hb_002946_190 Hb_002284_150--Hb_002946_190 Hb_000422_030 Hb_000422_030 Hb_158144_010--Hb_000422_030 Hb_001269_640 Hb_001269_640 Hb_158144_010--Hb_001269_640 Hb_158144_010--Hb_002284_150 Hb_002092_120 Hb_002092_120 Hb_158144_010--Hb_002092_120 Hb_006570_150 Hb_006570_150 Hb_158144_010--Hb_006570_150 Hb_001998_120 Hb_001998_120 Hb_000260_800--Hb_001998_120 Hb_000260_800--Hb_002284_150 Hb_000028_070 Hb_000028_070 Hb_000260_800--Hb_000028_070 Hb_012016_010 Hb_012016_010 Hb_000260_800--Hb_012016_010 Hb_180424_010 Hb_180424_010 Hb_000260_800--Hb_180424_010 Hb_001377_030 Hb_001377_030 Hb_000260_800--Hb_001377_030 Hb_001671_040--Hb_001953_070 Hb_006615_050 Hb_006615_050 Hb_001671_040--Hb_006615_050 Hb_004648_090 Hb_004648_090 Hb_001671_040--Hb_004648_090 Hb_008225_090 Hb_008225_090 Hb_001671_040--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001671_040--Hb_000010_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
283.971 217.546 707.102 133.402 104.783 210.717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
277.29 338.517 107.904 76.7468 112.003

CAGE analysis