Hb_001301_240

Information

Type -
Description -
Location Contig1301: 170098-175552
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09036: 171531-179611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_240 0.0 - - -
2 Hb_000975_220 0.1013842419 - - Histone H2B [Medicago truncatula]
3 Hb_000035_250 0.1497024119 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
4 Hb_000059_340 0.1517273632 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
5 Hb_006261_090 0.1561619899 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
6 Hb_158144_010 0.1645330387 - - -
7 Hb_001671_040 0.1662122971 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
8 Hb_004128_200 0.1699559589 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
9 Hb_000926_180 0.171266482 - - proline synthetase associated protein, putative [Ricinus communis]
10 Hb_000510_330 0.1726917757 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
11 Hb_001898_240 0.1728198972 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
12 Hb_092337_020 0.1728410676 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
13 Hb_000260_800 0.1730365248 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
14 Hb_000291_030 0.1732936574 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
15 Hb_002228_110 0.1736819509 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
16 Hb_003001_110 0.1750619582 - - oleoyl-acyl carrier protein thioesterase 1, chloroplastic [Jatropha curcas]
17 Hb_000866_280 0.1753881621 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
18 Hb_007313_090 0.179008215 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000003_300 0.1791363131 - - PREDICTED: uncharacterized protein LOC105631182 [Jatropha curcas]
20 Hb_002284_150 0.179138371 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]

Gene co-expression network

sample Hb_001301_240 Hb_001301_240 Hb_000975_220 Hb_000975_220 Hb_001301_240--Hb_000975_220 Hb_000035_250 Hb_000035_250 Hb_001301_240--Hb_000035_250 Hb_000059_340 Hb_000059_340 Hb_001301_240--Hb_000059_340 Hb_006261_090 Hb_006261_090 Hb_001301_240--Hb_006261_090 Hb_158144_010 Hb_158144_010 Hb_001301_240--Hb_158144_010 Hb_001671_040 Hb_001671_040 Hb_001301_240--Hb_001671_040 Hb_000975_220--Hb_000035_250 Hb_002284_150 Hb_002284_150 Hb_000975_220--Hb_002284_150 Hb_000975_220--Hb_158144_010 Hb_000260_800 Hb_000260_800 Hb_000975_220--Hb_000260_800 Hb_000975_220--Hb_001671_040 Hb_000035_250--Hb_001671_040 Hb_012340_090 Hb_012340_090 Hb_000035_250--Hb_012340_090 Hb_001953_070 Hb_001953_070 Hb_000035_250--Hb_001953_070 Hb_004128_200 Hb_004128_200 Hb_000035_250--Hb_004128_200 Hb_002343_040 Hb_002343_040 Hb_000035_250--Hb_002343_040 Hb_000035_250--Hb_002284_150 Hb_000407_040 Hb_000407_040 Hb_000059_340--Hb_000407_040 Hb_000010_240 Hb_000010_240 Hb_000059_340--Hb_000010_240 Hb_002681_060 Hb_002681_060 Hb_000059_340--Hb_002681_060 Hb_000059_340--Hb_006261_090 Hb_000061_470 Hb_000061_470 Hb_000059_340--Hb_000061_470 Hb_000866_280 Hb_000866_280 Hb_000059_340--Hb_000866_280 Hb_001898_240 Hb_001898_240 Hb_006261_090--Hb_001898_240 Hb_002228_110 Hb_002228_110 Hb_006261_090--Hb_002228_110 Hb_000329_590 Hb_000329_590 Hb_006261_090--Hb_000329_590 Hb_004648_090 Hb_004648_090 Hb_006261_090--Hb_004648_090 Hb_006261_090--Hb_004128_200 Hb_006261_090--Hb_001671_040 Hb_000422_030 Hb_000422_030 Hb_158144_010--Hb_000422_030 Hb_001269_640 Hb_001269_640 Hb_158144_010--Hb_001269_640 Hb_158144_010--Hb_002284_150 Hb_002092_120 Hb_002092_120 Hb_158144_010--Hb_002092_120 Hb_006570_150 Hb_006570_150 Hb_158144_010--Hb_006570_150 Hb_001671_040--Hb_001953_070 Hb_006615_050 Hb_006615_050 Hb_001671_040--Hb_006615_050 Hb_001671_040--Hb_004648_090 Hb_008225_090 Hb_008225_090 Hb_001671_040--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001671_040--Hb_000010_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.922106 0.993031 2.25728 0.337866 0.575444 0.650563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08338 1.22454 0.19257 0.172414 0.213695

CAGE analysis