Hb_027792_010

Information

Type -
Description -
Location Contig27792: 26058-27630
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29002: 26042-31818 , PASA_asmbl_29003: 26332-30709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027792_010 0.0 - - -
2 Hb_000950_070 0.1396621138 - - PREDICTED: uncharacterized protein LOC105645259 isoform X2 [Jatropha curcas]
3 Hb_007894_210 0.1704665295 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
4 Hb_002471_250 0.1731973797 - - Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]
5 Hb_002119_080 0.1740388799 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
6 Hb_000215_090 0.1791572761 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
7 Hb_001077_070 0.1801107455 - - 60S ribosomal protein L9, putative [Ricinus communis]
8 Hb_001396_210 0.1846840667 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002411_080 0.1859977534 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004449_120 0.1887213341 - - PREDICTED: uncharacterized protein LOC105631291 [Jatropha curcas]
11 Hb_001712_070 0.1923178722 - - PREDICTED: HD domain-containing protein 2 [Jatropha curcas]
12 Hb_001186_090 0.1928745803 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
13 Hb_002316_070 0.1935929201 - - PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial [Jatropha curcas]
14 Hb_000345_510 0.1955698723 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
15 Hb_029259_010 0.1962844938 - - hypothetical protein JCGZ_20186 [Jatropha curcas]
16 Hb_000185_050 0.1963668024 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
17 Hb_011386_050 0.1964565925 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
18 Hb_000866_310 0.1973755951 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
19 Hb_012340_090 0.1978850806 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
20 Hb_001025_090 0.1989946015 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]

Gene co-expression network

sample Hb_027792_010 Hb_027792_010 Hb_000950_070 Hb_000950_070 Hb_027792_010--Hb_000950_070 Hb_007894_210 Hb_007894_210 Hb_027792_010--Hb_007894_210 Hb_002471_250 Hb_002471_250 Hb_027792_010--Hb_002471_250 Hb_002119_080 Hb_002119_080 Hb_027792_010--Hb_002119_080 Hb_000215_090 Hb_000215_090 Hb_027792_010--Hb_000215_090 Hb_001077_070 Hb_001077_070 Hb_027792_010--Hb_001077_070 Hb_000950_070--Hb_002471_250 Hb_001396_210 Hb_001396_210 Hb_000950_070--Hb_001396_210 Hb_000950_070--Hb_000215_090 Hb_001517_050 Hb_001517_050 Hb_000950_070--Hb_001517_050 Hb_158144_010 Hb_158144_010 Hb_000950_070--Hb_158144_010 Hb_005389_100 Hb_005389_100 Hb_007894_210--Hb_005389_100 Hb_001699_210 Hb_001699_210 Hb_007894_210--Hb_001699_210 Hb_001005_160 Hb_001005_160 Hb_007894_210--Hb_001005_160 Hb_001322_020 Hb_001322_020 Hb_007894_210--Hb_001322_020 Hb_015292_040 Hb_015292_040 Hb_007894_210--Hb_015292_040 Hb_163591_010 Hb_163591_010 Hb_007894_210--Hb_163591_010 Hb_093666_010 Hb_093666_010 Hb_002471_250--Hb_093666_010 Hb_002471_250--Hb_000215_090 Hb_000270_470 Hb_000270_470 Hb_002471_250--Hb_000270_470 Hb_001186_090 Hb_001186_090 Hb_002471_250--Hb_001186_090 Hb_003848_040 Hb_003848_040 Hb_002471_250--Hb_003848_040 Hb_004122_040 Hb_004122_040 Hb_002119_080--Hb_004122_040 Hb_000331_060 Hb_000331_060 Hb_002119_080--Hb_000331_060 Hb_073973_130 Hb_073973_130 Hb_002119_080--Hb_073973_130 Hb_002119_080--Hb_001186_090 Hb_000107_190 Hb_000107_190 Hb_002119_080--Hb_000107_190 Hb_022132_050 Hb_022132_050 Hb_002119_080--Hb_022132_050 Hb_032202_100 Hb_032202_100 Hb_000215_090--Hb_032202_100 Hb_004357_050 Hb_004357_050 Hb_000215_090--Hb_004357_050 Hb_000130_270 Hb_000130_270 Hb_000215_090--Hb_000130_270 Hb_005288_130 Hb_005288_130 Hb_000215_090--Hb_005288_130 Hb_003207_180 Hb_003207_180 Hb_000215_090--Hb_003207_180 Hb_006615_050 Hb_006615_050 Hb_001077_070--Hb_006615_050 Hb_004807_020 Hb_004807_020 Hb_001077_070--Hb_004807_020 Hb_001950_070 Hb_001950_070 Hb_001077_070--Hb_001950_070 Hb_001025_090 Hb_001025_090 Hb_001077_070--Hb_001025_090 Hb_000866_310 Hb_000866_310 Hb_001077_070--Hb_000866_310 Hb_002909_040 Hb_002909_040 Hb_001077_070--Hb_002909_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96152 0.982125 8.67442 2.31126 2.05445 3.39559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78701 4.21576 0.34878 3.81894 1.14149

CAGE analysis