Hb_007894_210

Information

Type -
Description -
Location Contig7894: 154313-156807
Sequence    

Annotation

kegg
ID rcu:RCOM_0585710
description Vacuolar sorting protein SNF8, putative
nr
ID XP_012070790.1
description PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
swissprot
ID Q5M759
description Vacuolar protein sorting-associated protein 22 homolog 1 OS=Arabidopsis thaliana GN=VP22-1 PE=2 SV=2
trembl
ID A0A067KVS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00860 PE=4 SV=1
Gene Ontology
ID GO:0000814
description vacuolar protein sorting-associated protein 22 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_210 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
2 Hb_005389_100 0.1325099398 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
3 Hb_001699_210 0.1408038629 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
4 Hb_001005_160 0.143524845 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001322_020 0.1465353019 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
6 Hb_015292_040 0.147627176 - - PREDICTED: myb-like protein X [Jatropha curcas]
7 Hb_163591_010 0.1486672107 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
8 Hb_006816_100 0.1488582285 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
9 Hb_002284_210 0.1495609053 - - PREDICTED: protein canopy-1 [Jatropha curcas]
10 Hb_004128_200 0.1512792634 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
11 Hb_000230_480 0.1513722037 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Jatropha curcas]
12 Hb_000035_250 0.1522666584 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
13 Hb_001839_020 0.1537169497 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
14 Hb_010098_020 0.155741717 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_000123_140 0.1567968891 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
16 Hb_029695_080 0.1573648567 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
17 Hb_006615_050 0.1578091722 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
18 Hb_000453_040 0.1587934291 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
19 Hb_000959_220 0.1590075598 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000363_350 0.1595307895 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_007894_210 Hb_007894_210 Hb_005389_100 Hb_005389_100 Hb_007894_210--Hb_005389_100 Hb_001699_210 Hb_001699_210 Hb_007894_210--Hb_001699_210 Hb_001005_160 Hb_001005_160 Hb_007894_210--Hb_001005_160 Hb_001322_020 Hb_001322_020 Hb_007894_210--Hb_001322_020 Hb_015292_040 Hb_015292_040 Hb_007894_210--Hb_015292_040 Hb_163591_010 Hb_163591_010 Hb_007894_210--Hb_163591_010 Hb_000329_590 Hb_000329_590 Hb_005389_100--Hb_000329_590 Hb_004648_090 Hb_004648_090 Hb_005389_100--Hb_004648_090 Hb_000098_140 Hb_000098_140 Hb_005389_100--Hb_000098_140 Hb_002067_030 Hb_002067_030 Hb_005389_100--Hb_002067_030 Hb_001671_040 Hb_001671_040 Hb_005389_100--Hb_001671_040 Hb_000525_100 Hb_000525_100 Hb_005389_100--Hb_000525_100 Hb_001675_300 Hb_001675_300 Hb_001699_210--Hb_001675_300 Hb_065755_030 Hb_065755_030 Hb_001699_210--Hb_065755_030 Hb_000392_230 Hb_000392_230 Hb_001699_210--Hb_000392_230 Hb_006615_050 Hb_006615_050 Hb_001699_210--Hb_006615_050 Hb_007007_040 Hb_007007_040 Hb_001699_210--Hb_007007_040 Hb_001864_070 Hb_001864_070 Hb_001699_210--Hb_001864_070 Hb_010488_040 Hb_010488_040 Hb_001005_160--Hb_010488_040 Hb_000438_090 Hb_000438_090 Hb_001005_160--Hb_000438_090 Hb_000926_230 Hb_000926_230 Hb_001005_160--Hb_000926_230 Hb_001545_050 Hb_001545_050 Hb_001005_160--Hb_001545_050 Hb_002411_080 Hb_002411_080 Hb_001005_160--Hb_002411_080 Hb_000959_220 Hb_000959_220 Hb_001322_020--Hb_000959_220 Hb_003470_040 Hb_003470_040 Hb_001322_020--Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_001322_020--Hb_029695_080 Hb_000062_360 Hb_000062_360 Hb_001322_020--Hb_000062_360 Hb_003506_030 Hb_003506_030 Hb_001322_020--Hb_003506_030 Hb_014231_020 Hb_014231_020 Hb_001322_020--Hb_014231_020 Hb_004994_080 Hb_004994_080 Hb_015292_040--Hb_004994_080 Hb_000211_040 Hb_000211_040 Hb_015292_040--Hb_000211_040 Hb_001930_030 Hb_001930_030 Hb_015292_040--Hb_001930_030 Hb_000663_020 Hb_000663_020 Hb_015292_040--Hb_000663_020 Hb_001839_020 Hb_001839_020 Hb_015292_040--Hb_001839_020 Hb_000364_100 Hb_000364_100 Hb_015292_040--Hb_000364_100 Hb_001662_040 Hb_001662_040 Hb_163591_010--Hb_001662_040 Hb_009449_060 Hb_009449_060 Hb_163591_010--Hb_009449_060 Hb_000002_120 Hb_000002_120 Hb_163591_010--Hb_000002_120 Hb_000139_220 Hb_000139_220 Hb_163591_010--Hb_000139_220 Hb_010287_030 Hb_010287_030 Hb_163591_010--Hb_010287_030 Hb_002928_010 Hb_002928_010 Hb_163591_010--Hb_002928_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01612 1.24844 3.79289 1.5971 1.44735 1.38196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01732 1.52023 0.0736219 0.788381 0.818248

CAGE analysis