Hb_001675_300

Information

Type -
Description -
Location Contig1675: 220280-224920
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05000g
description POPTRDRAFT_645972; Peroxisome assembly protein 2
nr
ID XP_012073394.1
description PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9CA86
description Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1
trembl
ID A0A067KQM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06319 PE=4 SV=1
Gene Ontology
ID GO:0005829
description peroxisome biogenesis protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15535: 220294-225000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_300 0.0 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
2 Hb_001699_210 0.0595652716 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
3 Hb_002874_180 0.0886934767 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
4 Hb_000058_130 0.0951113109 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
5 Hb_000373_050 0.0983373858 - - PREDICTED: protein WHI3 [Jatropha curcas]
6 Hb_007007_040 0.1004995881 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
7 Hb_000003_170 0.1017012028 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
8 Hb_000051_060 0.1040987072 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003647_140 0.1059152856 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
10 Hb_000976_120 0.1069687713 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
11 Hb_010098_020 0.1071670008 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_000690_190 0.107542172 - - 40S ribosomal protein S7, putative [Ricinus communis]
13 Hb_000751_030 0.1083078708 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
14 Hb_000173_310 0.1088895796 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
15 Hb_006615_050 0.109138013 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
16 Hb_011618_050 0.1099353659 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
17 Hb_002316_140 0.1112899499 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
18 Hb_004312_010 0.1121086172 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
19 Hb_003760_030 0.1124335607 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
20 Hb_000789_320 0.1130334678 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001675_300 Hb_001675_300 Hb_001699_210 Hb_001699_210 Hb_001675_300--Hb_001699_210 Hb_002874_180 Hb_002874_180 Hb_001675_300--Hb_002874_180 Hb_000058_130 Hb_000058_130 Hb_001675_300--Hb_000058_130 Hb_000373_050 Hb_000373_050 Hb_001675_300--Hb_000373_050 Hb_007007_040 Hb_007007_040 Hb_001675_300--Hb_007007_040 Hb_000003_170 Hb_000003_170 Hb_001675_300--Hb_000003_170 Hb_065755_030 Hb_065755_030 Hb_001699_210--Hb_065755_030 Hb_000392_230 Hb_000392_230 Hb_001699_210--Hb_000392_230 Hb_006615_050 Hb_006615_050 Hb_001699_210--Hb_006615_050 Hb_001699_210--Hb_007007_040 Hb_001864_070 Hb_001864_070 Hb_001699_210--Hb_001864_070 Hb_001022_030 Hb_001022_030 Hb_002874_180--Hb_001022_030 Hb_077026_010 Hb_077026_010 Hb_002874_180--Hb_077026_010 Hb_002874_180--Hb_000058_130 Hb_002874_180--Hb_000003_170 Hb_000028_520 Hb_000028_520 Hb_002874_180--Hb_000028_520 Hb_000003_780 Hb_000003_780 Hb_002874_180--Hb_000003_780 Hb_000579_120 Hb_000579_120 Hb_000058_130--Hb_000579_120 Hb_000207_150 Hb_000207_150 Hb_000058_130--Hb_000207_150 Hb_002157_120 Hb_002157_120 Hb_000058_130--Hb_002157_120 Hb_000058_130--Hb_000028_520 Hb_001232_190 Hb_001232_190 Hb_000058_130--Hb_001232_190 Hb_003647_140 Hb_003647_140 Hb_000373_050--Hb_003647_140 Hb_007254_020 Hb_007254_020 Hb_000373_050--Hb_007254_020 Hb_000976_120 Hb_000976_120 Hb_000373_050--Hb_000976_120 Hb_014834_150 Hb_014834_150 Hb_000373_050--Hb_014834_150 Hb_000270_310 Hb_000270_310 Hb_000373_050--Hb_000270_310 Hb_001863_380 Hb_001863_380 Hb_000373_050--Hb_001863_380 Hb_003119_090 Hb_003119_090 Hb_007007_040--Hb_003119_090 Hb_000019_190 Hb_000019_190 Hb_007007_040--Hb_000019_190 Hb_000751_030 Hb_000751_030 Hb_007007_040--Hb_000751_030 Hb_023313_040 Hb_023313_040 Hb_007007_040--Hb_023313_040 Hb_003760_030 Hb_003760_030 Hb_007007_040--Hb_003760_030 Hb_000006_010 Hb_000006_010 Hb_007007_040--Hb_000006_010 Hb_005162_110 Hb_005162_110 Hb_000003_170--Hb_005162_110 Hb_001703_040 Hb_001703_040 Hb_000003_170--Hb_001703_040 Hb_005946_040 Hb_005946_040 Hb_000003_170--Hb_005946_040 Hb_000163_260 Hb_000163_260 Hb_000003_170--Hb_000163_260 Hb_004109_120 Hb_004109_120 Hb_000003_170--Hb_004109_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09233 2.91475 8.62539 4.98562 5.10027 4.67889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.71601 6.0261 2.53661 1.83953 4.75041

CAGE analysis