Hb_000003_170

Information

Type -
Description -
Location Contig3: 102281-107725
Sequence    

Annotation

kegg
ID rcu:RCOM_1454090
description Reticulocalbin-2 precursor, putative
nr
ID XP_012068579.1
description PREDICTED: reticulocalbin-2 [Jatropha curcas]
swissprot
ID Q28BT4
description Calumenin OS=Xenopus tropicalis GN=calu PE=2 SV=1
trembl
ID A0A067KWD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24476 PE=4 SV=1
Gene Ontology
ID GO:0012505
description calcium-binding ef hand family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31380: 104318-106923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_170 0.0 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
2 Hb_005162_110 0.0688477827 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
3 Hb_002874_180 0.0762347973 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
4 Hb_001703_040 0.0793027045 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
5 Hb_005946_040 0.0798342271 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
6 Hb_000163_260 0.0844209688 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
7 Hb_004109_120 0.0903230272 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
8 Hb_000028_520 0.0926954228 - - hypothetical protein L484_025125 [Morus notabilis]
9 Hb_000254_100 0.093249757 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
10 Hb_004807_020 0.0934084434 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
11 Hb_007821_020 0.0935450567 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
12 Hb_000537_100 0.0943117072 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_000676_070 0.0944744025 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
14 Hb_000061_180 0.0959405728 - - exonuclease, putative [Ricinus communis]
15 Hb_002631_240 0.096164468 - - JHL17M24.3 [Jatropha curcas]
16 Hb_065525_080 0.0989266303 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
17 Hb_010098_020 0.0994640118 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_001221_440 0.0996372378 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
19 Hb_001025_120 0.0996813116 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
20 Hb_007007_040 0.1002294855 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_170 Hb_000003_170 Hb_005162_110 Hb_005162_110 Hb_000003_170--Hb_005162_110 Hb_002874_180 Hb_002874_180 Hb_000003_170--Hb_002874_180 Hb_001703_040 Hb_001703_040 Hb_000003_170--Hb_001703_040 Hb_005946_040 Hb_005946_040 Hb_000003_170--Hb_005946_040 Hb_000163_260 Hb_000163_260 Hb_000003_170--Hb_000163_260 Hb_004109_120 Hb_004109_120 Hb_000003_170--Hb_004109_120 Hb_005162_110--Hb_005946_040 Hb_021650_010 Hb_021650_010 Hb_005162_110--Hb_021650_010 Hb_005731_110 Hb_005731_110 Hb_005162_110--Hb_005731_110 Hb_000051_060 Hb_000051_060 Hb_005162_110--Hb_000051_060 Hb_003752_070 Hb_003752_070 Hb_005162_110--Hb_003752_070 Hb_001022_030 Hb_001022_030 Hb_002874_180--Hb_001022_030 Hb_077026_010 Hb_077026_010 Hb_002874_180--Hb_077026_010 Hb_000058_130 Hb_000058_130 Hb_002874_180--Hb_000058_130 Hb_000028_520 Hb_000028_520 Hb_002874_180--Hb_000028_520 Hb_000003_780 Hb_000003_780 Hb_002874_180--Hb_000003_780 Hb_000788_030 Hb_000788_030 Hb_001703_040--Hb_000788_030 Hb_012438_030 Hb_012438_030 Hb_001703_040--Hb_012438_030 Hb_002631_240 Hb_002631_240 Hb_001703_040--Hb_002631_240 Hb_087313_010 Hb_087313_010 Hb_001703_040--Hb_087313_010 Hb_001504_010 Hb_001504_010 Hb_001703_040--Hb_001504_010 Hb_000120_890 Hb_000120_890 Hb_001703_040--Hb_000120_890 Hb_000537_100 Hb_000537_100 Hb_005946_040--Hb_000537_100 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_029622_120 Hb_029622_120 Hb_005946_040--Hb_029622_120 Hb_005946_040--Hb_002631_240 Hb_007558_090 Hb_007558_090 Hb_005946_040--Hb_007558_090 Hb_000163_260--Hb_001504_010 Hb_001882_010 Hb_001882_010 Hb_000163_260--Hb_001882_010 Hb_000163_260--Hb_012438_030 Hb_009476_130 Hb_009476_130 Hb_000163_260--Hb_009476_130 Hb_000163_260--Hb_001703_040 Hb_000163_260--Hb_000120_890 Hb_000207_300 Hb_000207_300 Hb_004109_120--Hb_000207_300 Hb_000254_100 Hb_000254_100 Hb_004109_120--Hb_000254_100 Hb_001824_080 Hb_001824_080 Hb_004109_120--Hb_001824_080 Hb_000724_020 Hb_000724_020 Hb_004109_120--Hb_000724_020 Hb_001158_160 Hb_001158_160 Hb_004109_120--Hb_001158_160 Hb_004339_040 Hb_004339_040 Hb_004109_120--Hb_004339_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.36599 5.63383 21.3559 10.8961 8.92411 7.12693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.39089 11.1392 5.65658 7.24404 13.1295

CAGE analysis