Hb_000207_300

Information

Type rubber biosynthesis
Description Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex
Location Contig207: 391535-395540
Sequence    

Annotation

kegg
ID mdm:103443887
description dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial
nr
ID XP_012070374.1
description PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9C8P0
description Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic OS=Arabidopsis thaliana GN=EMB3003 PE=2 SV=1
trembl
ID A0A067LI89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03921 PE=3 SV=1
Gene Ontology
ID GO:0005886
description dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21333: 391585-395592 , PASA_asmbl_21334: 392854-393125
cDNA
(Sanger)
(ID:Location)		 008_N24.ab1: 394948-395428 , 017_B06.ab1: 394898-395464 , 031_N24.ab1: 394883-395538 , 047_E05.ab1: 394704-395440 , 053_A18.ab1: 394791-395538

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_300 0.0 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
2 Hb_004109_120 0.056598214 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
3 Hb_003728_100 0.068257033 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
4 Hb_009225_020 0.072353124 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
5 Hb_000304_070 0.0747054883 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
6 Hb_000212_440 0.0833429005 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_001824_080 0.0835926335 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
8 Hb_005405_020 0.0853317963 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
9 Hb_006816_090 0.0855329145 - - PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
10 Hb_000254_100 0.0883175187 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
11 Hb_107879_010 0.0883264472 - - phosphoglycerate mutase, putative [Ricinus communis]
12 Hb_004452_120 0.0892656969 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
13 Hb_010863_050 0.0902585763 - - OTU domain-containing protein 6B, putative [Ricinus communis]
14 Hb_003363_070 0.0922425467 - - -
15 Hb_005601_020 0.0922454534 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
16 Hb_005542_130 0.0963975031 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
17 Hb_000221_140 0.0967467983 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_079526_040 0.097156576 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
19 Hb_001981_040 0.0972239252 transcription factor TF Family: PHD PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]
20 Hb_000757_030 0.0979518577 - - radical sam protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000207_300 Hb_000207_300 Hb_004109_120 Hb_004109_120 Hb_000207_300--Hb_004109_120 Hb_003728_100 Hb_003728_100 Hb_000207_300--Hb_003728_100 Hb_009225_020 Hb_009225_020 Hb_000207_300--Hb_009225_020 Hb_000304_070 Hb_000304_070 Hb_000207_300--Hb_000304_070 Hb_000212_440 Hb_000212_440 Hb_000207_300--Hb_000212_440 Hb_001824_080 Hb_001824_080 Hb_000207_300--Hb_001824_080 Hb_000254_100 Hb_000254_100 Hb_004109_120--Hb_000254_100 Hb_004109_120--Hb_001824_080 Hb_000724_020 Hb_000724_020 Hb_004109_120--Hb_000724_020 Hb_001158_160 Hb_001158_160 Hb_004109_120--Hb_001158_160 Hb_004339_040 Hb_004339_040 Hb_004109_120--Hb_004339_040 Hb_003728_100--Hb_009225_020 Hb_000221_140 Hb_000221_140 Hb_003728_100--Hb_000221_140 Hb_003462_070 Hb_003462_070 Hb_003728_100--Hb_003462_070 Hb_001022_030 Hb_001022_030 Hb_003728_100--Hb_001022_030 Hb_005405_020 Hb_005405_020 Hb_003728_100--Hb_005405_020 Hb_009225_020--Hb_005405_020 Hb_009225_020--Hb_003462_070 Hb_001205_300 Hb_001205_300 Hb_009225_020--Hb_001205_300 Hb_009225_020--Hb_000221_140 Hb_010863_050 Hb_010863_050 Hb_000304_070--Hb_010863_050 Hb_001623_270 Hb_001623_270 Hb_000304_070--Hb_001623_270 Hb_000304_070--Hb_001824_080 Hb_005588_080 Hb_005588_080 Hb_000304_070--Hb_005588_080 Hb_000304_070--Hb_000254_100 Hb_003376_230 Hb_003376_230 Hb_000212_440--Hb_003376_230 Hb_035273_020 Hb_035273_020 Hb_000212_440--Hb_035273_020 Hb_000212_440--Hb_005405_020 Hb_000061_180 Hb_000061_180 Hb_000212_440--Hb_000061_180 Hb_005539_010 Hb_005539_010 Hb_000212_440--Hb_005539_010 Hb_004452_120 Hb_004452_120 Hb_000212_440--Hb_004452_120 Hb_001824_080--Hb_000254_100 Hb_004109_260 Hb_004109_260 Hb_001824_080--Hb_004109_260 Hb_001824_080--Hb_004339_040 Hb_007821_020 Hb_007821_020 Hb_001824_080--Hb_007821_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0833 7.43823 28.6187 14.9252 11.7342 12.2979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0013 9.99457 11.4073 16.0827 24.1244

CAGE analysis