Hb_009225_020

Information

Type -
Description -
Location Contig9225: 32562-39635
Sequence    

Annotation

kegg
ID rcu:RCOM_0801750
description Phosphatase yidA, putative
nr
ID XP_012077400.1
description PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
swissprot
ID Q2ILG1
description Endoribonuclease YbeY OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=ybeY PE=3 SV=1
trembl
ID B9RS16
description Phosphatase yidA, putative OS=Ricinus communis GN=RCOM_0801750 PE=3 SV=1
Gene Ontology
ID GO:0009507
description haloacid dehalogenase-like hydrolase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62533: 32677-32947 , PASA_asmbl_62534: 32949-33318 , PASA_asmbl_62535: 33386-34563 , PASA_asmbl_62536: 34570-35112 , PASA_asmbl_62537: 36578-39554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009225_020 0.0 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
2 Hb_003728_100 0.0623837965 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
3 Hb_000207_300 0.072353124 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
4 Hb_005405_020 0.0758978373 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
5 Hb_003462_070 0.0770397768 - - arsenical pump-driving atpase, putative [Ricinus communis]
6 Hb_001205_300 0.0876609167 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
7 Hb_000221_140 0.0902492099 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
8 Hb_001022_030 0.0946787722 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
9 Hb_004109_120 0.0991232145 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
10 Hb_000212_440 0.1006225095 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000046_330 0.1017233438 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
12 Hb_029351_010 0.1024321308 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
13 Hb_021943_080 0.1028092558 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
14 Hb_093666_010 0.103335131 - - BnaC05g06620D [Brassica napus]
15 Hb_000740_050 0.103605684 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
16 Hb_006538_120 0.1038188725 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
17 Hb_004096_240 0.1042487046 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
18 Hb_031091_020 0.1050342054 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
19 Hb_021374_030 0.1060160393 - - hypothetical protein RCOM_0351490 [Ricinus communis]
20 Hb_000797_040 0.1064178697 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]

Gene co-expression network

sample Hb_009225_020 Hb_009225_020 Hb_003728_100 Hb_003728_100 Hb_009225_020--Hb_003728_100 Hb_000207_300 Hb_000207_300 Hb_009225_020--Hb_000207_300 Hb_005405_020 Hb_005405_020 Hb_009225_020--Hb_005405_020 Hb_003462_070 Hb_003462_070 Hb_009225_020--Hb_003462_070 Hb_001205_300 Hb_001205_300 Hb_009225_020--Hb_001205_300 Hb_000221_140 Hb_000221_140 Hb_009225_020--Hb_000221_140 Hb_003728_100--Hb_000207_300 Hb_003728_100--Hb_000221_140 Hb_003728_100--Hb_003462_070 Hb_001022_030 Hb_001022_030 Hb_003728_100--Hb_001022_030 Hb_003728_100--Hb_005405_020 Hb_004109_120 Hb_004109_120 Hb_000207_300--Hb_004109_120 Hb_000304_070 Hb_000304_070 Hb_000207_300--Hb_000304_070 Hb_000212_440 Hb_000212_440 Hb_000207_300--Hb_000212_440 Hb_001824_080 Hb_001824_080 Hb_000207_300--Hb_001824_080 Hb_005405_020--Hb_000212_440 Hb_003376_230 Hb_003376_230 Hb_005405_020--Hb_003376_230 Hb_003153_010 Hb_003153_010 Hb_005405_020--Hb_003153_010 Hb_000797_040 Hb_000797_040 Hb_005405_020--Hb_000797_040 Hb_000224_160 Hb_000224_160 Hb_005405_020--Hb_000224_160 Hb_003462_070--Hb_001205_300 Hb_000061_020 Hb_000061_020 Hb_003462_070--Hb_000061_020 Hb_000920_030 Hb_000920_030 Hb_003462_070--Hb_000920_030 Hb_000740_050 Hb_000740_050 Hb_003462_070--Hb_000740_050 Hb_021943_080 Hb_021943_080 Hb_003462_070--Hb_021943_080 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_001205_300--Hb_000740_050 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_006538_120 Hb_006538_120 Hb_000221_140--Hb_006538_120 Hb_001660_120 Hb_001660_120 Hb_000221_140--Hb_001660_120 Hb_009775_010 Hb_009775_010 Hb_000221_140--Hb_009775_010 Hb_000221_140--Hb_000212_440 Hb_003038_200 Hb_003038_200 Hb_000221_140--Hb_003038_200 Hb_000221_140--Hb_005405_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2947 5.63918 21.0677 13.1445 7.56104 14.2985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7829 7.84456 6.72456 10.81 20.8743

CAGE analysis