Hb_000046_330

Information

Type -
Description -
Location Contig46: 260409-263434
Sequence    

Annotation

kegg
ID rcu:RCOM_0679730
description hypothetical protein
nr
ID XP_012069404.1
description PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02021 PE=4 SV=1
Gene Ontology
ID GO:0009507
description nad -binding rossmann-fold superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43643: 260483-263419
cDNA
(Sanger)
(ID:Location)		 048_M17.ab1: 260508-262607

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_330 0.0 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
2 Hb_001205_300 0.0868595779 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
3 Hb_028960_020 0.0982964357 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
4 Hb_000212_440 0.0987513841 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_041290_020 0.099686392 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
6 Hb_001040_100 0.0997274808 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
7 Hb_000010_140 0.1007388894 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_069662_010 0.1012887525 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
9 Hb_021943_080 0.1016262739 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
10 Hb_009225_020 0.1017233438 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
11 Hb_004310_140 0.1030316648 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
12 Hb_003440_060 0.1035963064 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
13 Hb_003159_140 0.1039443044 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000074_080 0.104831285 - - unknown [Populus trichocarpa]
15 Hb_002073_190 0.1063399431 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
16 Hb_003462_070 0.1075709436 - - arsenical pump-driving atpase, putative [Ricinus communis]
17 Hb_000797_040 0.1079596694 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
18 Hb_035273_020 0.1080239924 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
19 Hb_093666_010 0.1082920858 - - BnaC05g06620D [Brassica napus]
20 Hb_000116_190 0.1088520643 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000046_330 Hb_000046_330 Hb_001205_300 Hb_001205_300 Hb_000046_330--Hb_001205_300 Hb_028960_020 Hb_028960_020 Hb_000046_330--Hb_028960_020 Hb_000212_440 Hb_000212_440 Hb_000046_330--Hb_000212_440 Hb_041290_020 Hb_041290_020 Hb_000046_330--Hb_041290_020 Hb_001040_100 Hb_001040_100 Hb_000046_330--Hb_001040_100 Hb_000010_140 Hb_000010_140 Hb_000046_330--Hb_000010_140 Hb_003462_070 Hb_003462_070 Hb_001205_300--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000740_050 Hb_000740_050 Hb_001205_300--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_007426_110 Hb_007426_110 Hb_028960_020--Hb_007426_110 Hb_006483_110 Hb_006483_110 Hb_028960_020--Hb_006483_110 Hb_001348_080 Hb_001348_080 Hb_028960_020--Hb_001348_080 Hb_002205_030 Hb_002205_030 Hb_028960_020--Hb_002205_030 Hb_000797_040 Hb_000797_040 Hb_028960_020--Hb_000797_040 Hb_004846_220 Hb_004846_220 Hb_028960_020--Hb_004846_220 Hb_003376_230 Hb_003376_230 Hb_000212_440--Hb_003376_230 Hb_035273_020 Hb_035273_020 Hb_000212_440--Hb_035273_020 Hb_005405_020 Hb_005405_020 Hb_000212_440--Hb_005405_020 Hb_000061_180 Hb_000061_180 Hb_000212_440--Hb_000061_180 Hb_005539_010 Hb_005539_010 Hb_000212_440--Hb_005539_010 Hb_004452_120 Hb_004452_120 Hb_000212_440--Hb_004452_120 Hb_041290_020--Hb_004846_220 Hb_041290_020--Hb_006483_110 Hb_004109_080 Hb_004109_080 Hb_041290_020--Hb_004109_080 Hb_041290_020--Hb_028960_020 Hb_000138_100 Hb_000138_100 Hb_041290_020--Hb_000138_100 Hb_000406_200 Hb_000406_200 Hb_041290_020--Hb_000406_200 Hb_000035_470 Hb_000035_470 Hb_001040_100--Hb_000035_470 Hb_003159_140 Hb_003159_140 Hb_001040_100--Hb_003159_140 Hb_004020_040 Hb_004020_040 Hb_001040_100--Hb_004020_040 Hb_004319_080 Hb_004319_080 Hb_001040_100--Hb_004319_080 Hb_003438_050 Hb_003438_050 Hb_001040_100--Hb_003438_050 Hb_002681_090 Hb_002681_090 Hb_001040_100--Hb_002681_090 Hb_069662_010 Hb_069662_010 Hb_000010_140--Hb_069662_010 Hb_000010_140--Hb_001205_300 Hb_006810_030 Hb_006810_030 Hb_000010_140--Hb_006810_030 Hb_000608_380 Hb_000608_380 Hb_000010_140--Hb_000608_380 Hb_012194_050 Hb_012194_050 Hb_000010_140--Hb_012194_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.71539 4.34001 14.674 10.417 9.9233 14.6441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.79155 8.01533 4.33174 10.9745 15.3758

CAGE analysis