Hb_069662_010

Information

Type -
Description -
Location Contig69662: 1509-4246
Sequence    

Annotation

kegg
ID pmum:103320051
description uncharacterized LOC103320051
nr
ID XP_008219885.1
description PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5XH49
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015477mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54622: 1599-2854 , PASA_asmbl_54623: 1640-2860 , PASA_asmbl_54624: 3253-4171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069662_010 0.0 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
2 Hb_004531_140 0.0820355475 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
3 Hb_000608_380 0.0821192795 - - conserved hypothetical protein [Ricinus communis]
4 Hb_021346_030 0.0840073735 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
5 Hb_002184_150 0.0899323298 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_001205_300 0.0929657062 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
7 Hb_002079_030 0.0935130217 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
8 Hb_003440_060 0.0989891269 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
9 Hb_000347_040 0.0996191181 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
10 Hb_000046_330 0.1012887525 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
11 Hb_000920_030 0.1064443415 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_000441_060 0.1068156984 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
13 Hb_006538_120 0.1070129467 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
14 Hb_003462_070 0.1072220785 - - arsenical pump-driving atpase, putative [Ricinus communis]
15 Hb_000023_260 0.1088902477 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
16 Hb_000375_390 0.1102674535 - - poly-A binding protein, putative [Ricinus communis]
17 Hb_000212_440 0.1105502203 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_004994_050 0.1109164174 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
19 Hb_004096_240 0.1119091269 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
20 Hb_004330_090 0.1131294303 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_069662_010 Hb_069662_010 Hb_004531_140 Hb_004531_140 Hb_069662_010--Hb_004531_140 Hb_000608_380 Hb_000608_380 Hb_069662_010--Hb_000608_380 Hb_021346_030 Hb_021346_030 Hb_069662_010--Hb_021346_030 Hb_002184_150 Hb_002184_150 Hb_069662_010--Hb_002184_150 Hb_001205_300 Hb_001205_300 Hb_069662_010--Hb_001205_300 Hb_002079_030 Hb_002079_030 Hb_069662_010--Hb_002079_030 Hb_000479_250 Hb_000479_250 Hb_004531_140--Hb_000479_250 Hb_000181_130 Hb_000181_130 Hb_004531_140--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_004531_140--Hb_009328_020 Hb_109000_020 Hb_109000_020 Hb_004531_140--Hb_109000_020 Hb_002496_020 Hb_002496_020 Hb_004531_140--Hb_002496_020 Hb_006538_120 Hb_006538_120 Hb_000608_380--Hb_006538_120 Hb_000441_060 Hb_000441_060 Hb_000608_380--Hb_000441_060 Hb_005127_030 Hb_005127_030 Hb_000608_380--Hb_005127_030 Hb_000221_140 Hb_000221_140 Hb_000608_380--Hb_000221_140 Hb_000608_380--Hb_001205_300 Hb_000948_170 Hb_000948_170 Hb_021346_030--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_021346_030--Hb_000627_250 Hb_031284_070 Hb_031284_070 Hb_021346_030--Hb_031284_070 Hb_000080_120 Hb_000080_120 Hb_021346_030--Hb_000080_120 Hb_000816_100 Hb_000816_100 Hb_021346_030--Hb_000816_100 Hb_000700_150 Hb_000700_150 Hb_002184_150--Hb_000700_150 Hb_163950_030 Hb_163950_030 Hb_002184_150--Hb_163950_030 Hb_002184_150--Hb_001205_300 Hb_003440_060 Hb_003440_060 Hb_002184_150--Hb_003440_060 Hb_008642_040 Hb_008642_040 Hb_002184_150--Hb_008642_040 Hb_003462_070 Hb_003462_070 Hb_001205_300--Hb_003462_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_000740_050 Hb_000740_050 Hb_001205_300--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_001205_300--Hb_009225_020 Hb_001205_300--Hb_000948_170 Hb_001828_040 Hb_001828_040 Hb_002079_030--Hb_001828_040 Hb_142328_010 Hb_142328_010 Hb_002079_030--Hb_142328_010 Hb_011486_040 Hb_011486_040 Hb_002079_030--Hb_011486_040 Hb_000333_080 Hb_000333_080 Hb_002079_030--Hb_000333_080 Hb_002079_030--Hb_004531_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.3055 5.96196 14.4212 13.6944 11.5445 16.8334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0107 11.2304 5.14797 5.86344 21.7886

CAGE analysis